Colias croceus (clouded yellow): 123694779
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Entry
123694779 CDS
T08651
Name
(RefSeq) probable ATP-dependent RNA helicase pitchoune
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
ccrc
Colias croceus (clouded yellow)
Brite
KEGG Orthology (KO) [BR:
ccrc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccrc03041
]
123694779
03009 Ribosome biogenesis [BR:
ccrc03009
]
123694779
Enzymes [BR:
ccrc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123694779
Spliceosome [BR:
ccrc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
123694779
Ribosome biogenesis [BR:
ccrc03009
]
Eukaryotic type
90S particles
Helicases
123694779
Pre-60S particles
123694779
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
ERCC4
MICSWaP
AAA_19
Helicase_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
123694779
NCBI-ProteinID:
XP_045496298
LinkDB
All DBs
Position
10:6269542..6273100
Genome browser
AA seq
481 aa
AA seq
DB search
MSSENKNPKFRELRVSKSTLKAIKSMGFKYMTDIQSEVLPKALDGYDIVATAKTGSGKTL
SFLIPVVELVKKVMDTETSATRCIIVSPTRELAIQTNTVLQDLISFHDGMTSALVIGGES
RKGQSNLLAQDVHIVVATPGRLFDHMRTKEFNYKHVCCLVLDEADKIFQYGFEEDLKQII
NRLPKNRQTMLFSATHSEITEALIKSAMKDDFHTINTNEDNDRATVEGLKQGYVICETEY
RLFWLHKLLKKTQNQKVMVFFSSCKSVIFHHEFLSKYCNMPVLCIHGKLNQADRTNVMTS
FYNADKMALFCTDLAARGLDIPAVDWIVQFDPPSDTNEYIHRVGRTARGLGAEGCAVLLL
RPEEKEFVNYLNEAKIFLDKYETWDKYNNLQPKLDAAMEDPKFHKMAVEAFEGYIRAFEV
KKLKHVFNLLNMDMDIVAKSFGLKGKPDVDIRVGFSKKHRPRKRKAAMWTSKPMPDKISK
S
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgagttcagaaaataaaaatccaaaatttagagaattacgtgtgtcaaaatcaacattg
aaagcgatcaaaagcatgggttttaagtacatgactgatatccaatctgaagtgttgccc
aaagccctagatgggtatgatattgtggctacagcaaaaacaggttcagggaaaactcta
tcgtttttaatacctgttgtagaattggtcaaaaaagtaatggatacagaaacatcagct
acccgttgcattattgtatcacctacgagagaattagcaatacaaaccaacacagtactt
caagacttaatttcattccatgatggaatgacttctgcattggttattggaggggagagt
agaaaaggacagagcaatttattagcgcaagatgttcatatagtagttgcaacaccagga
agactttttgaccacatgaggaccaaggagtttaattataaacatgtatgttgtcttgta
ttggatgaagctgataaaatatttcagtatggttttgaggaagatttgaaacaaataatc
aatagacttccgaagaatagacagacaatgttatttagtgcaactcattctgaaataaca
gaagcattgataaaatcagcaatgaaagatgatttccacacaataaatactaatgaagat
aacgacagagcaactgtagaaggacttaaacaaggatatgttatatgtgaaacagaatac
agactattttggctacataaactgctgaaaaaaactcaaaatcaaaaagtgatggtattt
ttttcaagctgtaaatcagttatatttcatcatgagttcctatcgaaatattgcaatatg
ccagtgctttgcattcatggcaagttgaaccaggcagatagaacaaatgtaatgacaagc
ttttataatgcggataaaatggcactgttctgtaccgatttagctgcaaggggattggat
attccagctgttgattggatagtgcagtttgatccaccttctgatacaaatgaatatatt
catagagtaggaagaacagcaagaggtctaggggccgaaggctgtgctgtactattgttg
agaccagaggaaaaggagtttgtcaactacttgaatgaagcaaaaattttcttagacaag
tacgagacatgggataaatataataatttacaaccaaaattagatgctgcaatggaagac
ccaaagtttcataaaatggctgttgaagcatttgagggttacataagagcatttgaagtg
aaaaaattgaaacatgtatttaatttgctcaacatggacatggatattgttgctaaatct
tttggcctaaaaggaaaacctgatgttgatataagggttggcttcagtaaaaagcacagg
cccagaaaaaggaaggcagcaatgtggacttctaaaccaatgccagataaaatctccaag
tcatag
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