Colias croceus (clouded yellow): 123696116
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Entry
123696116 CDS
T08651
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
ccrc
Colias croceus (clouded yellow)
Pathway
ccrc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ccrc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
123696116
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccrc03021
]
123696116
Enzymes [BR:
ccrc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
123696116
Transcription machinery [BR:
ccrc03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
123696116
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Nop14
SURF2
DUF6179
Motif
Other DBs
NCBI-GeneID:
123696116
NCBI-ProteinID:
XP_045498094
LinkDB
All DBs
Position
12:complement(1432243..1437828)
Genome browser
AA seq
1659 aa
AA seq
DB search
MDIETNFSSVLKGLTSVDPESVQFLTFTDEDIRKLSVVKITNMTTFDTLGYPTPGGLYDP
AMGPIRDRNDFCATCNNLMLHCPGHFGYIELPLCVVNPLYIKNIYTLFRVSCLKCHKIQM
DDRIKFILKLQLDLIDAGYVTAALDLENLVIDTKEKGQPSSPDKPHKTIRKYKKLLKKAD
GVTQTFQNKNTDKLRTKIINFYFKAMNTARTCIFCRSKLIKVTTTDNKIMYNTTADTGSK
GLKIFMPDELKQNCSAIAENDEDILKYCLPILKHANLKPATDVFFMQVLPVLPSNVRPCN
IVQGDLVEHPHNNVYKSILGKSYTARVVLQVLKSQDPQKTIDKLDAEPRKSYEGTSGESP
AEKLHTLWQELQLNAQNLLSNSGPKTSSYGLKQIIEKKQGIIRMHMMGKRVNFAARSVIT
PDPNVDIDEIGMPDVFATKLTYPVPVTEWNVDELRKMVINGPNVHPGAEKLEIKNGRIIR
IPPDSIEKRKSLANRLLTPEEYKKTGLKIVHRHLINGDVLILNRQPSLHKPSMMAHRARI
LKGEKTIRLHYANCKSYNADFDGDEMNAHFPQNEIARSEAYNIMSVRHQYLVPKDGTPLS
GLIQDHVISGVRMSLRGAFFNKSDYQQLVFQALANHKGEIKLLPPTILKPVTLWSGKQVL
STIIINNIPKGKPYLSLIGKAKISAKAWQKTKVRPWKAGGEQFSNPNEMSEAEVIIRKGE
LLSGVLDKTHYGATPYGLVHCMYELYGGDSSSALLSSFSKVFTFYLQWIGFTLGVKDILV
VPEADKKREEIVRLVRQVGKLAAVKATELPADTDESKIKDTIGDMMNKDPKFRANLDRQY
KNVLDSYTNDINTVCLTQGLLEKFPYNNLQLMVQSGAKGSTVNTMQISCLLGQIELEGKR
PPLMMSGRSLPSFPPYDITPRAGGFIDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRS
GYLQRCLIKHLEGLSVAYDHTVRDADGSVIQFAYGEDGLDVLKCQYIKKDQFPFLDINVN
AVISKSTIKKLKEEEDKAIAKATKSLKKWKKKYGSPFVKERSNGFAKFSAIARKNITLDE
KPTDETRDPYYWELEKKWRSLDEEERAEYTRKKCPDPIPSKMSPEYKFGVINEQLDEIIQ
SYLKNRDQNIFRETTENVKFKEVINAKYLASMAAPGEPVGLLAAQSIGEPSTQMTLNTFH
FAGRGDMNVTLGIPRLREILMTASANLKTPNMDIPFLDNISDLTRKAEKLRRKMNRVTVA
DVLEKIDVECEIVIKPNRQLKTTMRFVFLPHSQFKTQYVIKPAQIIKHMQNKFFSEMLTH
IRKQAKATCGVLWSTEKEKKKRVSADSDDEDNEVFEEKPDKAAGREPVDSSDEEGPNDDD
DNTDVKIRKKQADEQEYDDPESEEEEKSDDEVDIENEEQSVKDIEEEEEDEKSEKVSAAH
NKSMADVVERLNDATNYIFDTKSFKWCELTVLFPISFLKVDLSQALREAAMKSVIYEIKH
IKRAITNKEKGVLYLKTEGINIVQMFKYNDMLNLNKLYSNDIHAIARTYGIEAANKVIIK
EIQNVFNVYGIAVDPRHLSLVADYMTYNGVFEPMSRKGMEASSSPLQQMSFESSLIFLKE
AVLNAKTDNLRSASSCLMIGQPCRIGTGAFSLHYSKVVG
NT seq
4980 nt
NT seq
+upstream
nt +downstream
nt
atggacattgaaacaaatttttcgtcagtcttgaaagggctgacgtctgttgatccggaa
tctgtccagtttctaacattcacggatgaagacatcaggaaattgagcgttgtcaaaata
accaatatgacgacttttgatactttgggctaccccacacctggaggattgtacgacccg
gcaatgggcccgataagagaccgtaatgacttttgtgctacttgcaataacctaatgtta
cactgtcccggtcattttggatacatagaactacctctgtgtgttgtaaatccgctctat
attaaaaatatatacacattgttccgggtttcctgcttaaaatgccataaaattcaaatg
gatgacagaataaagtttatattaaaattacaactggatttaatagacgcaggctatgtg
actgctgctctggatttagaaaaccttgttattgatacaaaagagaaaggacagccaagt
agtccagataaaccgcacaaaactattagaaaatataaaaagttattaaagaaagcagat
ggtgtaacacagactttccagaataagaacacagataaattgagaactaagattataaat
ttttatttcaaagcaatgaatacggccaggacatgcatattctgtagaagtaagttaata
aaagtcacaacaacagataataaaattatgtacaatacaacagcagacacaggatcgaaa
gggctaaaaatatttatgccagatgaattgaaacaaaactgtagtgctattgctgagaat
gatgaagatattctgaagtattgtcttccaatattgaaacatgccaaccttaaacctgca
acagatgtattctttatgcaagtattgcctgtcttaccatccaatgttcggccttgtaat
atagtgcagggtgatttagttgaacacccccataataatgtctacaaaagtattcttgga
aagtcctatacagctagagttgttctacaagtgttaaaaagccaagatcctcagaaaacc
atagataaacttgatgcagaaccaaggaaatcttatgaaggtacatctggtgagtctcca
gcagagaaattgcatacactgtggcaagaattacagttgaatgctcaaaatctgcttagc
aatagtggtccaaaaactagttcttacggtctgaagcaaatcatagaaaagaaacaaggt
attataagaatgcacatgatgggaaagagagtcaattttgctgctcgatctgtcatcaca
ccagatcctaatgtggatatagatgaaataggaatgccggatgtttttgctacaaaacta
acctatcctgtacctgttacagaatggaatgtggatgagttaagaaaaatggtaattaat
ggcccaaatgttcaccctggtgctgaaaagttagaaattaagaatggacgaataataaga
attccacctgactccatagagaaaagaaaaagtctggctaacagattacttacccctgaa
gagtataagaaaacaggtttaaagattgttcacagacatttaataaatggtgatgtttta
atattgaatcgacagccgtctcttcacaagcctagtatgatggcacacagagctagaatc
cttaaaggagagaaaactattagattacactatgctaactgcaaatcatacaatgccgat
tttgatggtgatgaaatgaatgcacatttcccacaaaacgagattgctagaagtgaagct
tataacattatgtcagttcgtcatcaatatttagtgccaaaggacggaacaccattgagt
ggtttaattcaagatcatgtcatttcaggtgtaagaatgtcattgcgaggagcattcttc
aataaatcagactatcaacaacttgtttttcaagctctagcaaatcataaaggagaaata
aaactactaccacctacaatattaaaaccagtcacgctctggtccggtaaacaagttctt
tctacaattattataaataatatcccaaaaggcaaaccatatttgtcattgataggaaaa
gccaaaatcagtgctaaagcttggcaaaaaacaaaagtaaggccttggaaagcaggaggt
gaacaattttctaaccctaatgaaatgtctgaagcagaagttataataagaaaaggagaa
cttttgagtggtgtattggacaaaactcactatggtgctacaccttatggtctcgtgcat
tgtatgtacgagttgtatggtggagatagctcaagtgctcttttaagttcgttttcgaag
gttttcacgttctaccttcaatggatcggattcactctcggcgtcaaagatattcttgtc
gtaccggaagcagacaaaaagagggaagaaatcgtacgtctagtgagacaggtcggtaaa
ctcgcagctgttaaagcgacagaattacccgcagatactgacgaaagtaaaattaaagat
actattggtgatatgatgaacaaagatccaaagttcagggcgaatttagatagacaatac
aaaaatgtacttgattcctatacaaatgatataaacacagtctgtttaactcaaggatta
ttagagaaattcccatataacaatcttcaattaatggtacaatctggtgctaaaggatct
acagtcaacactatgcagatttcatgtttgttgggacaaattgaattagaaggcaaaaga
cctccactgatgatgtccggcaggtccttgcctagttttcctccatacgacataacaccc
agagctggtggttttatagacggtcgctttatgacaggaattcaaccacaagagttcttc
ttccattgtatggctggtcgtgaaggtctgattgatacagctgttaaaacgagtcgttct
ggttatttacaaaggtgtctaatcaaacatctcgaaggtctgagtgttgcgtatgatcac
acggttcgcgatgctgatggcagcgtcattcaatttgcttatggcgaagatggactagat
gtactgaaatgtcaatatattaaaaaagaccaatttccattcctagatataaatgttaat
gcagtcattagtaaatctactatcaaaaaacttaaggaggaagaagacaaagcaatagcg
aaagcgacaaagtcgttgaagaaatggaagaaaaagtatggcagtccatttgtgaaagaa
aggagcaatggatttgctaaattctctgcaattgcaaggaaaaacatcacactcgacgaa
aaacccacggatgaaactcgtgatccatattattgggagcttgaaaaaaagtggagatca
ttggacgaagaagaaagagctgaatatacaagaaagaaatgcccagacccaattcccagt
aaaatgtcccctgaatataagtttggtgttattaatgaacaacttgacgaaattattcaa
agttacctaaagaatcgtgatcagaacatatttagagaaaccaccgagaatgtaaaattc
aaggaagtaattaatgctaaatatttagcatctatggcagctcccggagaacctgtaggg
ttgctagcagcacagtctataggagaaccgtcaactcagatgacactgaataccttccac
tttgccggtagaggtgacatgaacgtcaccctcggtataccacgtctaagagaaattctc
atgactgcgtcagcaaaccttaaaacaccaaatatggatataccgttccttgataacatc
tccgacctaactcgtaaagctgagaaattacgaaggaaaatgaatcgagttactgtagct
gacgtactagaaaaaatagacgtggagtgtgaaatcgtaatcaaaccgaatagacagttg
aagacaactatgcgtttcgtatttctaccacactcccagttcaaaacgcagtatgtaata
aaaccagcacagataataaagcatatgcagaataaattcttctcggaaatgttaacgcat
attcgtaagcaagctaaagccacttgtggtgttttgtggtcgactgaaaaggaaaagaaa
aagagagtttctgctgacagtgatgatgaagataatgaggttttcgaagaaaagccggat
aaagcggctggacgagaaccagtggatagctcggatgaagagggacctaacgatgatgac
gacaatactgatgtgaaaatccgcaaaaaacaagcagatgagcaggagtacgatgatccc
gaatctgaggaagaagaaaagtctgatgatgaagtagatatcgaaaatgaggaacaaagc
gtcaaggatattgaagaagaagaagaagacgaaaagtcggagaaagtatcagctgctcac
aataagtccatggcagacgtcgttgaacgtctcaatgatgctacaaactacatctttgat
accaagtcctttaaatggtgtgaactaacagttctattcccaattagcttccttaaagtc
gatctctctcaagcattacgagaagcagccatgaaatccgtcatttatgaaatcaagcat
atcaaacgtgctatcaccaacaaagaaaagggagtactatacctaaaaacagaaggaata
aacatcgttcaaatgttcaaatataatgatatgttgaatttgaataagctatacagtaac
gatattcacgcgattgctagaacgtacggcatcgaagcggctaataaagtgataataaag
gaaattcaaaatgtgttcaatgtgtacggtattgcagttgacccgaggcatttgtctttg
gtcgcggattacatgacctataatggagtgtttgagcccatgagtcgtaagggtatggag
gcatcttcttcaccattgcagcaaatgtcctttgaatcgtctctgatatttttgaaggaa
gccgttcttaatgctaaaactgataaccttcggtctgcgtcaagttgccttatgatcgga
caaccgtgtcgcatcggtacgggagcgtttagtttacattatagtaaagttgtgggataa
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integrated database retrieval system
