Colias croceus (clouded yellow): 123697244
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Entry
123697244 CDS
T08651
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
ccrc
Colias croceus (clouded yellow)
Pathway
ccrc03020
RNA polymerase
ccrc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccrc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
123697244
09124 Replication and repair
03420 Nucleotide excision repair
123697244
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccrc03021
]
123697244
03400 DNA repair and recombination proteins [BR:
ccrc03400
]
123697244
Enzymes [BR:
ccrc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
123697244
Transcription machinery [BR:
ccrc03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
123697244
DNA repair and recombination proteins [BR:
ccrc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
123697244
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF3137
Motif
Other DBs
NCBI-GeneID:
123697244
NCBI-ProteinID:
XP_045499678
LinkDB
All DBs
Position
1:complement(7334560..7342920)
Genome browser
AA seq
1896 aa
AA seq
DB search
MATTCDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGV
IDRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKLLVSPTNP
KIKEVVMKSKGQPRKRLTYVYDLCKGKNICEGGEDMDIGKEGEEGKRGTGHGGCGHYQPS
IRRQGLDLTAEWKHANEDTQEKKITITAERVWEILKQITDEESFILGMDPKFARPDWMIV
TVLPVPPLSVRPAVVMFGSAKNQDDLTHKLADIIKANNELMRNEQTGAAAHVLADNIRML
QFHVATFVDNDMPGMPKAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPD
PNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNAQYPGAKYIVRDNGERIDLR
FHPKPSDLHLQYGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTS
PYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTK
RDVFLTKEQVMNLLMFLPTWDGKIPQPCILKPTPLWTGKQIFTLIIPGNVNMVRTHSTHP
DEEDDGPYKWISPGDTKVVVEHGELLMGILCKKSLGASAGSLLHICMLELGHETAGRFYG
NIQTVINNWLLLEGHSIGIGDTIADPQTYQEIQRAIVKAKDDVIEVIQKAHNMELEPTPG
NTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQ
QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDT
AVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLAGETVEFQNLPTIK
LSNKAFEKKFKFDPTNERYLKRIFSEDIIKELTESGYVIADLESEWDQLGKDRQVLREIF
PSGESKVVLPCNFRRMIWNVQKIFHINKRSPTDLSPIKVIQGVKDLLKKCVIVAGEDRLS
KQANENATLLFQCLVRSTLCTKFVSEDYRLSTEAFEWLIGEIETRFQQAQVNPGEMVGAL
AAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARD
AEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTKISPW
LLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNNEESKFQ
DNDEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQTEAKKRIIITEQGEFK
AIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLQFY
GLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHAEVD
PMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKHGMEMGGLGVGMGVGGGMFFGVGTPSMT
PLMTPWSNQNTPGYGSSVWSPGQVGSSMTPGPSFSPSGASDASGMSPSYSAWSPQPGSPG
SPGAPLSPYASPAGASPSYSPTSPIYVGASPSLTPTSQNYSPTSPSYSPTSTHYSPTSPI
YTPTSPSYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPT
SSSYSPTSPSFSPTSRVYSPTSPAYSPSSPSYSPNGPVYSPASHSYSPSSPNYTPASPAY
SPTSHSYSPTSPQYSPTSPSYSPSSPKYSPPSPKYSPTSPSLSGGSPTYSSPQYSPTSPQ
YSPSPAYSPSSPQHSGSTHYSPSSPNYSPSSPNYSSPGYSPSSTKYSPTSPTFTPTSHNY
SPLSPAYSPSSGGPSSYSPTSPTFTPTSPTYDDGDD
NT seq
5691 nt
NT seq
+upstream
nt +downstream
nt
atggcgactacgtgtgattcgaaggcgcctttgcgccaagtaaaaagagtacagtttggt
atattatcgccagatgaaatccgacggatgtcagttacagaagggggcatacgcttccct
gaaaccatggaaggaggaagacctaagctcggtggtctcatggaccctcgacaaggggtg
attgataggacatccagatgtcaaacctgcgctggtaacatgactgaatgtcctggtcat
tttggacatatagacttggcaaagccagtgttccacattggatttataacaaaaaccata
aaaattttgagatgcgtctgcttttactgttcaaaacttcttgtcagcccgacaaatcca
aaaattaaagaagtggttatgaaatccaagggtcagcctcgtaaaaggttgacatatgtt
tatgacttatgtaaaggtaaaaatatttgtgagggtggtgaagacatggatattggaaag
gaaggagaagaagggaaaaggggtacagggcatggtggttgtggtcattaccagccatct
attagaaggcaaggtttggaccttacggcagaatggaaacatgctaatgaagacacacaa
gagaagaaaataacaattacagcagaaagagtttgggaaatacttaaacagattacagat
gaagaatcctttatcctgggtatggatcctaagtttgcaagaccagattggatgattgtt
actgtattgccagttccaccactatctgtaagacctgctgttgttatgtttggatcagcc
aaaaatcaagatgatttgacgcacaaacttgctgacatcattaaagctaacaatgaactg
atgagaaatgaacagactggagctgcagcccacgtacttgcagataatattagaatgcta
caatttcatgttgctacttttgtggacaatgatatgcctggcatgccaaaagctatgcag
aaatccggaaaaccacttaaagctattaaagcgcgtttaaaaggcaaagaaggtagaatt
agaggaaatcttatgggaaaacgagtcgacttttcagcgcgaactgtaatcacacctgat
cccaatttacgtattgatcaagtaggagtgccaagatcaatagctcaaaatttgacattc
cctgaattagtcacacctttcaacatagacagaatgcaggaacttgtaagaagaggtaat
gcacagtatccaggagcaaagtatatcgttcgtgacaatggagagagaattgatttaagg
tttcatccaaaaccttcagatcttcatttacaatatggttataaagttgaacgtcatttg
agagacgatgatttggtcatattcaaccggcaacccacgctacacaaaatgagtatgatg
ggtcatagagttaaagtattgccttggtcaacattccgtatgaatttaagttgtacatca
ccctataatgctgattttgatggagatgaaatgaatcttcatgtaccacagtcaatggaa
acccgtgctgaggttgagaatatccacataacacccagacagattattaccccacaagcc
aataagcctgtcatgggtattgtacaagatactttaacagctgtaagaaaaatgacaaaa
agagatgtcttccttaccaaagaacaagttatgaaccttctcatgttcttacccacatgg
gatggtaaaattccacaaccttgtatattgaaaccaacaccactttggactggtaaacaa
attttcactttaattattcctggaaacgtaaacatggttcgaacacattccactcatcct
gatgaggaagatgatggcccatacaaatggatttcaccaggggatacaaaagttgttgtt
gaacatggagagttgctaatgggtattttgtgtaaaaagtctttgggtgcttctgctggt
tcacttttacatatttgcatgttggagttaggccacgaaactgctggccgtttctatggt
aacattcaaacagtaatcaacaactggctacttctggaaggtcactccattggtatagga
gacactattgctgatcctcaaacataccaagaaatccaacgtgcgatcgttaaagccaaa
gacgatgtaatagaggttattcaaaaagcgcataatatggagttggagcctacgcctggt
aatacattaaggcagactttcgaaaatcaagtgaatcgcatattgaacgatgcccgtgac
aaaactggtggttcagctaaaaagtctctaactgagtacaacaatctcaaagctatggtg
gtgtctggttctaaaggatccaatattaacatctctcaggttattgcttgtgtaggacaa
caaaacgttgaaggtaaacgaataccatttggttttcgtaaaagaacgttgccacatttc
atcaaagatgattacggtccagaatccagaggatttgtagaaaattcatatcttgctggc
ttgacgccatcagagttttatttccacgctatgggtggtcgtgagggtcttatcgatact
gctgtaaaaacagctgaaactggttatattcaacgtcgtcttataaaggctatggagtct
gtaatggttcattatgatggcacagttcgtaattcagttgggcaacttatccaattgcgt
tatggtgaagacggattagctggtgaaacagtagagtttcaaaatctaccaactatcaaa
ttgtctaataaagcttttgaaaagaagttcaaattcgacccaaccaatgaaagatacctc
aagagaattttcagtgaagatataattaaagaacttacagaatctggctatgttattgct
gatttagaaagtgaatgggatcaattaggcaaagatagacaagtgttacgtgaaattttc
ccaagtggcgaatctaaagttgtattgccttgtaatttcagaagaatgatttggaatgtc
caaaaaattttccatatcaacaaaagatcacctactgacctgagtcccataaaagtaatt
cagggtgtaaaagatttattaaagaagtgtgttattgtggctggtgaagatagactttct
aagcaagccaatgagaatgccacattgctattccaatgtcttgtaagatctactttatgt
accaaatttgtgtcagaagattataggctttcaactgaagcatttgaatggttgatagga
gaaatagaaactcgtttccaacaagcacaagtaaatcctggtgaaatggttggagcttta
gctgctcaatctttaggagaaccagctacacagatgacattgaatactttccactttgct
ggtgtgtcatccaaaaacgtaactcttggtgtgccacgtcttaaggaaattatcaatatt
tccaagaaacctaaagccccctcccttaccgttttccttactggtggtgcagccagagat
gctgaaaaggctaagaacgttctatgccgactcgaacatacgacactgcgaaaagtcact
gcgaatactgctatttactatgatccagacccacaaaacactgttattgctgaagatcaa
gagtttgttaatgtgtactatgaaatgcctgattttgatcccactaaaatttcaccttgg
ttattacgtattgaattagatcgtaaaaggatgactgataaaaaacttactatggaacag
atagcagaaaaaataaatgctggttttggtgatgatctgaattgtattttcaatgacgat
aacgctgaaaagctggtacttcgtataaggattatgaacaacgaagaaagcaaattccag
gataatgacgaggaaaccgttgataagatggaagatgatatgtttctgaggtgtatagag
gctaatatgctttctgacatgacactgcagggtattgaagccattgcaaaagtgtacatg
catttaccacagactgaagctaaaaaacgtattattattacggaacagggtgaatttaaa
gccatcgccgaatggttgttggaaactgacggaacatccctaatgaaagtactttctgaa
cgtgatgtagatccagtgaggaccttcagtaacgatatttgtgaaattttccaagttttg
ggtatagaggctgtacgtaaatccgtggagaaagaaatgaacgctgtgttacaattttac
ggtctatacgtaaactatcgccacttggctttgctttgtgacgtaatgactgctaaaggt
catcttatggctatcacacgtcacggtattaacagacaagacactggcgccttgatgaga
tgttcttttgaggaaacagtagatgtactactagatgcagcaagccatgctgaggtggat
cctatgagaggagtatcggaaaacatcattatgggacaacttccaagaatgggaacagga
tgctttgatttgttgctggatgctgagaaatgtaaacatggaatggagatgggcggtctc
ggtgttggtatgggagtcggcggtggaatgttctttggagttggtacaccttccatgact
cccttgatgactccatggtcaaatcaaaacacgcccggatatggaagcagcgtttggtct
cctggtcaagtcggcagcagcatgacaccggggccatcattttcaccatccggcgcatcg
gacgcgtcgggcatgtccccgtcgtacagcgcgtggtctccgcagcccggctcgcccggc
tcccccggcgctccgctctccccatacgcgtctcccgcgggagcttcgccatcttactcc
cccaccagccccatatacgtcggcgcttcgcccagcctcacgccaacgtcacaaaactac
tctcccacgagcccgtcctactcgcccacgtcgacgcattactccccgacctcgccgatc
tacaccccgacctcacccagttattctccaacttctccgggctattcgccgacgtcgccg
tcctattcaccgacttcgccgagctattcgccgacgtcgccgagttattcacctacgagt
ccggcgtactcacccacatcgcccagttattcgccgacatcaccgagctactcgccgacc
agttcgtcttattcgccgacaagtccgtctttctcccctacgagcagggtgtactcgccc
acgtctcccgcttactctccgtcgtctcctagctattcccctaacggcccggtgtacagt
ccagcatcgcacagctattctccatcgtcacccaattacacgccggcttctccggcatat
tcgcctacgagtcactcgtactctcctacatcgccacagtattccccgacctcgcccagc
tattcaccgtcctctccgaagtactcaccgccgtctccaaagtattcgccgacatctcct
tccttatcgggaggaagcccgacttattcgagcccccaatattctcccacgagtccacaa
tattcaccgagtccagcttattctccatcttccccgcagcactctggcagtactcattat
tcaccgtcatctccaaactactcgccttcgtcgccgaactattcgtcgccaggctactcg
ccatcttccaccaagtattccccgacgtcgcccacattcacgcccacttctcacaattat
tctccgctatctcccgcttactcgccgtcatcgggcggtccttcatcatattctcctact
tctcctacttttacacctacatcgcctacatatgatgatggtgatgattaa
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integrated database retrieval system
