Colias croceus (clouded yellow): 123698366
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Entry
123698366 CDS
T08651
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD isoform X1
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
ccrc
Colias croceus (clouded yellow)
Pathway
ccrc03022
Basal transcription factors
ccrc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccrc00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
123698366
09124 Replication and repair
03420 Nucleotide excision repair
123698366
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccrc03021
]
123698366
03036 Chromosome and associated proteins [BR:
ccrc03036
]
123698366
03400 DNA repair and recombination proteins [BR:
ccrc03400
]
123698366
Enzymes [BR:
ccrc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
123698366
Transcription machinery [BR:
ccrc03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
123698366
Chromosome and associated proteins [BR:
ccrc03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
123698366
DNA repair and recombination proteins [BR:
ccrc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
123698366
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
ResIII
DEAD
AAA_11
Motif
Other DBs
NCBI-GeneID:
123698366
NCBI-ProteinID:
XP_045500930
LinkDB
All DBs
Position
16:9240489..9261761
Genome browser
AA seq
760 aa
AA seq
DB search
MKLTVDGLLVYFPYDYIYPEQYAYMLELKRALDAKGHGLLEMPSGTGKTISLLSLIVAYM
IQNPHHIRKLIYCSRTVPEIEKVLEELKNLFKYYEKSQGEKPSLTGVVLSSRKNLCIHPE
VSQEREGKLVDGKCHALTASYIRDRHERDNSIPICQFYEGFNREGKESMLPYGVYNMDDL
KQYGADRNWCPYFLSRFAIIHAEIVVYSYHYLLDPKIAEVVSKELNKEAVVVFDEAHNID
NVCIDSLSVRITRRTIDKSSLALQTLEKTVARIREEDSARLALEYEQMVEGLREAALARD
TDTILGNPILPDEVLNEVVPGNIRNAEHFLGFLKRFIEYLKTRLRIQHVVQESPAGFLKD
VASRVCIERKPLRFCATRLQSLLRTLEIPDPSQLGSLTLVTHLATLVSTYTKGFVIIIEP
FDDKTPTVSNPILHFSCMDSSIAMRPVFARFQSVIITSGTLSPLDMYPKILDFNPVVMSS
FTMTLARPCILPMIVSKGSDQVAISSKYESREDVAVIRNYGQLLVEISACVPDGVVCFFT
SYLYLESVVGAWYDQGVVASLQRHKLLFIETQDSAETSFALINYIKACESGRGAVLLSVA
RGKVSEGVDFDHHLGRAVLMFGIPYVFTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA
AQCVGRALRGKTDYGVMIFADKRFSRADKRGKLPRWIQAHLKDSLTALSTEEAVQICKRW
LRQMAQPFTREDQLGVSLLTLQQLQSKEQQEKIEKQVLQK
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgaaattgactgtagatggtttactcgtgtattttccatatgattatatttatccagaa
caatacgcctatatgctggaattaaagcgggctctagatgcaaagggtcatggactgcta
gaaatgccgtcaggaacgggcaaaacaatatcacttttatcactcattgttgcatacatg
atacagaatccccatcacattagaaaattaatatactgctctcgtactgtgccggaaatt
gaaaaagttttagaggaattgaagaatctgttcaaatactatgagaagtcgcaaggtgaa
aagccaagcctaactggggtggtgttgagttcacgcaagaatttgtgcatacatccagag
gtgtcacaagaaagagaaggtaaacttgttgatggaaaatgtcatgctctcaccgccagc
tacataagagatagacatgagagggataattccataccaatttgccagttctacgagggt
ttcaacagggaaggcaaagagtcaatgttaccatatggagtgtacaatatggacgatcta
aagcagtatggagccgatagaaattggtgtccctatttcttgtcaagatttgccattata
cacgcagagatagttgtctattcctaccactatttgctagatccaaagatagcagaggtc
gtgtccaaagagttgaacaaggaggcggttgttgtctttgacgaggcacacaacatagac
aatgtgtgcatagactcgcttagtgttagaataacaaggagaaccatagacaaaagttcg
ctagcgttgcaaactttggagaaaactgttgccagaatacgcgaagaagactcagctaga
ttggcgttggaatacgaacaaatggtggaaggtctgcgggaagcagcactcgcgagggat
actgatacaatactgggaaaccccatactgcccgatgaagttcttaacgaggtggttcca
ggcaatatacgtaacgcagaacatttcctaggattcctgaagagattcatagaatacctg
aaaactagactgcgaatacaacatgtggtacaagagtcaccagctggtttcctcaaagac
gtcgcgtcccgcgtgtgcatagaacgcaaaccgctgcgtttctgcgcaacccgactgcaa
tctctattacgtacattggaaataccggacccatcacaactcgggtctctaacactagtc
acgcacctggctacactcgtctcgacgtatactaagggattcgtgattataatagagccg
ttcgatgacaaaacacccactgtgtccaacccgatattgcatttttcatgtatggattcg
tcaatagcgatgcggccagtttttgcaagatttcaaagtgttataatcacttcaggtaca
ttatcgccattggacatgtatccgaaaatattggacttcaacccagtagtgatgagttcc
ttcaccatgacgctcgccagaccctgtatattgcctatgatagtgtcaaaaggcagcgat
caagttgccatatctagtaaatatgaatcgagagaagatgtcgcagttataaggaactat
ggacagctgctggttgagatatcagcatgtgtgccagatggagtcgtttgctttttcacc
tcatatctatatttggaaagcgtggtcggagcttggtatgatcaaggtgtggtcgctagc
ttacaaaggcataaactgctgttcatcgaaacgcaagactcggcggaaactagttttgca
ctgatcaattatattaaagcgtgtgagagcggtcggggggcggtgctgctgtcggtggcc
cgcggcaaggtgtcggagggcgtggacttcgaccaccacctggggcgggccgtgctcatg
ttcggtataccctacgtgttcacgcagagcaggatactgaaggccaggctcgagtatctg
cgcgatcagtttcagattcgcgagaatgacttcctaacgtttgatgctatgcgacacgcg
gcacagtgtgtggggcgagctttgcgaggtaagacggattacggcgtgatgatatttgcg
gacaagcgtttcagccgcgcggataaacgcggcaagttgcctcgatggatacaggcgcat
ctgaaggactcactcaccgcactttctacggaagaagccgtgcagatatgcaagcgttgg
ttacgacaaatggcgcagccgttcacgagagaagaccagcttggagtatctctactaacc
ttacaacagttacaatccaaggaacaacaggaaaagattgaaaaacaagtactacagaag
tga
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