Colias croceus (clouded yellow): 123698375
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Entry
123698375 CDS
T08651
Name
(RefSeq) 3'-5' RNA helicase YTHDC2-like
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
ccrc
Colias croceus (clouded yellow)
Brite
KEGG Orthology (KO) [BR:
ccrc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccrc03041
]
123698375
Enzymes [BR:
ccrc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123698375
Spliceosome [BR:
ccrc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
123698375
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HA2_C
YTH
OB_NTP_bind
Helicase_C
R3H
Ank_2
DEAD
Ank
RNA_hel_CTD
Ank_4
AAA_22
nSTAND3
AAA_19
AAA_14
Ank_5
AAA_25
T2SSE
WHD_HA2
ATPase_2
nSTAND_NTPase5
SRP54
AAA_16
PhoH
Zeta_toxin
NB-ARC
Cas3-like_C_2
FtsK_SpoIIIE
NPHP3_N
AAA_30
UvrD-helicase
Viral_helicase1
Motif
Other DBs
NCBI-GeneID:
123698375
NCBI-ProteinID:
XP_045500941
LinkDB
All DBs
Position
16:complement(9267753..9280680)
Genome browser
AA seq
1329 aa
AA seq
DB search
MNSKRGKRNKGSKVFPIAESVSIALKIQLDKFLSDENETELDLPSFLSAQERAFMHRTVY
KLGLKSKSRGKGVNRYMTIYKRIGSTIIQNDAKLILDSNMRCTITELFNAFPITSKEKED
LSCCPEKERSPQLAHKSMGQLNNGVAQIPNTSYNPELIKFREKLPVYEQRHELMNAINSN
QVIIVAGATGCGKTTQLPQLVLEHCQEHKQPVRIYCTQPRRISAVSVAERVAYERMEKIG
QSVGYQIRLESRVSPRTVLHYCTNGVLLRTLMAGDDALTGVTHVFVDEVHERDKFSDFLL
IALRDALARIKDLKVILMSATMDTQIFSRYFNSCPVITIPGRLHDVQRYYLEDVLKLTKY
SNKKMAKVERELKASIKPGHGYCSQSQLEGQKQAEIVEEKDSLDPAMQADMDEFLDECFN
EGSLDSFSQVLYMFLSEGVCADAQHSACGRTALHAAAARGLTHTAQQILRIGADPSIKDK
NGKTAYDYAVDGGHTECAKVLATFNHIEEPKNNVEEDIAADNFLLDVYHHSFSEELIDHD
LMLALVKHIHLNMAKGSILIFLPGYDDIVSLRDMIQACPEMNTLKYQIFTLHSNMQTLDQ
KKVFNPLPNARKIIISTNIAETSITIDDVVYVVDSCKVKEKYYESNGGVCSLQCVWTSRA
CCQQRAGRAGRTQPGHCFHMCSKRRFNSLPLNSVPEILRVPLQELCLHTKLLAPGNTPIA
DFLSKALEPPSFLAVRNAVTLLKTIGALTPMEDLTEIGQNLLDLTVEPKLGKMLLYACVM
KCLDPILTIVCSLSNKEPFQISMKPENRKKGSLARKEFAAGSYSDHMALLRAFQAWQIAR
SNGKEKAFCAKNLICGATMEMIVGYRSQLLAQLRALCLVKARGSGDIKDVNLNSEKWHVV
KAVLVSGLYPSIARVDRDSCSLRTSKEVKVAFHPSSTLHVGGGLNGSKKSVPGLPTDWVV
FEEISRVGRFCFIRCNTLVTPLTVALFGGPLRLPAGALTQRANPPGLSSDSDSEADENNS
SPDTAVLTLDDWIAFTADASDAISVYYLRQKLCALVIRRMSNPGKAMTPLDEQILNTVVH
VLGAEEKNIGLNQPAGIGQRPKPLTVDSPLWRTREEEQYRHENKYYPQNSQNDFANSFYQ
GYGYRNGQRPWRNDGMPQGFSPQSYSGPKSPMSPNGKTLLANIEKYAENGESNTRYFIVK
ADDLHTVDMAQASGSYPFTQNTLKKMQRAKQEGSRVVAIFSCGAESRVTGAAALADGAAL
DWTHNAHVPFHMLRHVTNSLAGNARVTGARDGTEICSNSGRALLSALAQRRRHTHAHTPR
PIQKHPADQ
NT seq
3990 nt
NT seq
+upstream
nt +downstream
nt
atgaattctaaaaggggtaagcgtaataaagggagtaaggtttttccaattgctgaatcc
gtcagcatagctttgaagatacagctggataagtttctcagtgacgaaaatgagacggaa
ctcgatttgccctcgtttttatctgcacaagaacgggctttcatgcataggactgtgtac
aaattggggctgaagtcaaagtcgcgcgggaaaggtgtaaaccgatacatgacgatctac
aaaaggattggatcgacaataatccaaaatgacgcaaaacttatactcgactcaaacatg
cgatgcacaattacggaactgttcaacgcatttcccataactagtaaagagaaggaggac
cttagctgttgtccggagaaagaaaggagcccacaattggcccataagagtatgggacag
ttgaacaatggggtggcccagattccaaacacttcatacaacccagaattaatcaaattc
agagagaagttaccagtgtatgagcagcgacatgaattaatgaacgctatcaattctaac
caggtgatcatagtggccggcgctacagggtgcggcaaaactacgcagttaccacaactc
gtgctcgaacactgtcaggagcacaagcagcccgtgcggatatactgcacacagccgaga
cggatatcggccgtttctgtcgccgagagggtagcatacgagcgtatggagaagataggc
caatccgtcggctatcaaataagactagagtctcgcgtgagcccgcgcacagtactgcac
tactgcactaacggcgtgcttctacgaacactcatggctggcgacgatgcgcttactggt
gtaacacacgtgttcgtggacgaagtgcacgaacgcgacaagttcagcgactttttgctc
atagcgttgcgtgatgcactcgctcggatcaaggatctgaaagttatactcatgtccgct
accatggatacgcagatattttcaagatacttcaacagttgtcccgtgatcacgattccg
ggccgactgcacgatgtacagcgctattatttagaggatgtgcttaagttgacgaagtat
agtaataagaaaatggcgaaggttgaacgcgagttgaaagctagtatcaagccgggccac
ggttattgttcgcagtcgcagcttgaagggcagaaacaagcagaaatagtagaagaaaaa
gatagtctagaccccgctatgcaggcggacatggacgaattcttggacgagtgcttcaat
gagggtagtttggactcgttcagccaggtgctgtacatgttcctgtcggagggcgtgtgt
gcggacgcgcagcactcggcgtgcggccgcaccgccctgcacgcggccgccgccagggga
ctgacgcacacggctcagcagatactgcgcattggggccgacccgtcaataaaagataaa
aatggtaaaactgcgtatgattacgccgtggatggaggtcacacggaatgcgctaaagtc
ctcgctacatttaatcatatcgaagagccaaaaaataatgtagaagaggacattgcagct
gataacttcctgctagatgtttatcatcactcgttctcagaagagttgatagatcacgat
ctcatgttagctttagtgaagcacatacatttaaatatggctaaaggcagcattctcata
ttccttcctggatacgatgatatagtgagcttaagagacatgattcaggcgtgccctgaa
atgaacacactgaagtaccaaatattcacattacatagtaatatgcaaacactagatcag
aagaaagtgtttaacccactgccaaatgctagaaaaattatcatatcgacaaatatagct
gaaacttctatcactattgatgatgtggtctacgttgtggattcgtgtaaagttaaagag
aagtattatgagtcaaatggtggagtttgttctttgcaatgcgtttggacgtccagagcc
tgttgccaacagagagccggtcgtgcgggacgaacgcaaccgggacattgcttccacatg
tgttccaaaagacgtttcaactctctgccacttaattccgtgccagaaatacttcgtgtt
ccattacaagaactatgtcttcatacaaaacttttagcgccaggaaacactccgatagca
gatttcctatctaaagctctcgaaccgccgtcattcttggccgtcagaaatgcggttact
ctgctcaagactatcggagcgttgactccaatggaagatttgacggaaatcggacaaaat
ttactggatcttacagttgagccaaaattaggcaaaatgttgctttacgcttgcgtcatg
aagtgtctagatccaatactaacaatagtgtgcagcttatcaaataaagagccgttccaa
atatcaatgaaaccagaaaataggaagaaaggcagcttggcgaggaaagaattcgcagct
ggtagttattctgatcacatggctctgctgagagctttccaggcgtggcagatagctaga
tctaatggcaaagagaaagcattttgcgccaaaaatcttatttgtggtgcaacaatggaa
atgatcgtcggataccgttcccagttattggctcagttaagagccttatgcttagtgaag
gcaagaggatccggtgatataaaagatgtcaatttgaattctgagaaatggcacgtcgtt
aaagcggtgctagtcagtggattgtatccgtccatagctcgtgtagaccgagattcttgt
tcattgcgaacatcaaaggaagtgaaagttgcatttcatccaagttcgaccttacatgtg
ggtggaggattgaatggctccaaaaaatcagtgccaggcttgcctacagattgggttgtg
ttcgaagaaatatcacgcgttggacgattttgctttatccggtgcaacactttggtcaca
ccgttaacagtggcgttgttcggtgggccgttaagattgccagctggagcattaacgcaa
cgagccaatcctccaggattatccagtgattcagacagtgaagcggacgagaataactct
tctcccgacacagccgtgttaacgttggacgactggatagcgttcactgcggatgcctca
gacgcgataagcgtttattatttgcgacaaaaattgtgcgccctagttatacgtcgaatg
tccaacccgggcaaggcgatgacgccactcgacgaacagattctcaataccgtcgttcac
gtattgggagcggaagagaaaaacattggtctgaaccaacccgctggtattggacaacga
ccgaaacccctaacagtggactcgccactctggcggacaagagaggaagaacagtaccgt
catgagaataaatactatccacagaacagtcaaaacgacttcgccaacagtttttatcaa
ggatacggatacagaaatggccagagaccgtggaggaacgatggaatgccgcaagggttt
tctccacagtcctatagtggaccgaagagtccaatgtcgccaaacggaaagactttatta
gcgaatatagagaaatacgcagagaacggggagagcaatacgcggtattttatcgtgaag
gcggacgacttgcacaccgtggacatggctcaagcgagcggcagctaccccttcacacag
aacactcttaagaaaatgcagagagctaaacaggagggcagtcgcgtggtggcgatattc
tcgtgcggggcggagagccgcgtgacgggcgcggccgcgctcgctgacggggccgcgctc
gactggacgcacaacgcgcacgtgcccttccacatgctgcgccacgttaccaactcgcta
gccggtaacgcgcgagtgactggcgctagagacggcacagagatctgctcgaactcgggc
cgagctctcctctcggcactggcccagcgccgcagacacacacacgcacacacaccccgc
cccatacagaaacaccccgcggatcaataa
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