Colias croceus (clouded yellow): 123699471
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Entry
123699471 CDS
T08651
Name
(RefSeq) protein CLP1 homolog isoform X1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
ccrc
Colias croceus (clouded yellow)
Pathway
ccrc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccrc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123699471
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccrc03019
]
123699471
Enzymes [BR:
ccrc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
123699471
Messenger RNA biogenesis [BR:
ccrc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
123699471
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
CbiA
AAA_10
MMR_HSR1
AAA_21
ATP_bind_1
AAA_24
nSTAND3
RsgA_GTPase
Motif
Other DBs
NCBI-GeneID:
123699471
NCBI-ProteinID:
XP_045502368
LinkDB
All DBs
Position
18:1473903..1478444
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AA seq
420 aa
AA seq
DB search
MTEVQLQEFKLEPDSELRFEVESKNEKVVLEVKSGYAELFGTELVKGKPYEFHTGAKVAV
FTWHGCTVELRGRTEVSYVAKETPMVVYLNVHAALEQQRVAAEQENTRGPVTMVVGPGDV
GKSTLTRILLNYAVRMGRRPIYVDLDVGQGHISVPGTIGALLVERPASIEEGFSQQAPLV
YHFGHKSPDENLELYNTIVSRLAEVIAERCENNKKASTSGVIINTCGWVKGAGYKVLTHA
AQAFEVDVILVLDNERLYNELKRDMPKFVKVVYLPKSGGVVERSISQRAELRDARIREYF
YGKRTPYYPHSFDVKFTDLKIYKVGAPSLPDSCMPLGMRAAEALTALVAVWAGPALAHRL
LAVSFAAAPDDLALHANLAGFVCVTAVDTERQTLTILSPQPRPLPNTILLLSELQYMDNH
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgacggaagttcagttacaagagtttaaacttgaaccagattcagaacttcggtttgaa
gtcgaatcaaagaacgaaaaagttgttttagaggttaagagtggttacgctgagttgttt
ggcacagagctggttaaaggtaaaccatatgagttccacacgggagccaaggtagcagtg
ttcacgtggcacggctgtacggtagaactacgcggtcgcacggaagtcagctatgtggcg
aaggaaacaccaatggtggtatacctcaatgtacacgctgcattagagcagcagagagtt
gcggcagaacaggaaaacactcggggcccagttactatggtggttgggccgggtgatgtc
ggcaagtccacgctgaccaggatcctgctaaactatgctgtgagaatggggcgtaggcct
atatatgtggatcttgacgtgggacaggggcatattagtgtcccaggaaccattggtgca
cttctagtagagcggccagcgtccatagaggaggggttcagccagcaagcacctctggtg
taccactttggtcacaagtcccctgatgaaaatttagaactatataatacaattgtgtct
cgacttgctgaggttatcgctgagaggtgcgagaataataagaaagcatcaacatcaggc
gtaataattaacacatgtggatgggtgaaaggcgccggttataaagtgttgacgcacgcc
gctcaggcatttgaggtggatgtgatattagtattagataacgaaaggctgtacaatgaa
ttgaaacgtgacatgccaaagtttgtgaaagttgtgtacttgcccaaaagtggaggggtt
gtagaacggtcgatatcgcaacgcgccgagttacgggacgcgcgaatccgcgaatatttc
tatggaaagaggactccatactacccgcattcgtttgacgttaagttcacagatcttaaa
atatataaggtgggcgcgccgtcgctgcccgactcgtgcatgccgctgggcatgcgcgcg
gcggaggcgctgacggcgctggtggcggtgtgggcggggcctgcgctggcgcaccgcctg
ctcgccgtctccttcgcggccgcgcccgacgatctggcgctgcacgctaacctcgcgggc
ttcgtgtgcgtgactgcagtggacacagagcgacaaactctcacaattctgtcgccgcag
ccgcgacccctcccaaacactattttgttactctcagaactacagtatatggacaaccac
tag
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