Colias croceus (clouded yellow): 123700337
Help
Entry
123700337 CDS
T08651
Name
(RefSeq) ATP-dependent RNA helicase WM6
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ccrc
Colias croceus (clouded yellow)
Pathway
ccrc03013
Nucleocytoplasmic transport
ccrc03015
mRNA surveillance pathway
ccrc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccrc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123700337
09122 Translation
03013 Nucleocytoplasmic transport
123700337
03015 mRNA surveillance pathway
123700337
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccrc03019
]
123700337
03041 Spliceosome [BR:
ccrc03041
]
123700337
Enzymes [BR:
ccrc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123700337
Messenger RNA biogenesis [BR:
ccrc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
123700337
Spliceosome [BR:
ccrc03041
]
Complex C
Other components
EJC/TREX
123700337
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
123700337
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
123700337
NCBI-ProteinID:
XP_045503477
LinkDB
All DBs
Position
19:complement(9111871..9113461)
Genome browser
AA seq
425 aa
AA seq
DB search
MADNDDLLDYEDEEQADQQTADGATEAAPKKEVKGSYVSIHSSGFRDFLLKPEILRAIVD
CGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSENHVYVLVMCHT
RELAFQISKEYERFSKYMAGVKVSVFFGGMPIQKDEEVLKTSCPHIVVGTPGRILALVNS
KKLNLKHLKHFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKF
MQDPMEVYVDDEAKLTLHGLQQHYLKLKENEKNKKLFELLDILEFNQVVIFVKSVQRCIA
LAQLLTDQNFPAIGIHRNMSQDERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNY
DMPEDSDTYLHRVARAGRFGTKGLAITMVSDEGDAKILNEVQDRFDVNITELPEVVELST
YIEGR
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaatgacgatcttctcgactacgaagacgaagagcaggcagatcagcagacc
gctgacggagcaaccgaagcggcgccaaaaaaagaggttaagggatcctatgtatctatt
cacagttccggcttcagagattttctgctcaaacccgagattttacgagctatagtcgat
tgtggtttcgagcatccgtctgaagtacaacacgaatgtataccacaagcggtactgggt
atggatatcttgtgccaagctaagtcgggtatgggaaaaacagctgtgtttgtattagcg
acgttgcaacagctcgagccttctgagaaccacgtctacgttctagtcatgtgtcatacc
agagagttggccttccaaatcagcaaggagtacgagcggttctcgaagtacatggccgga
gttaaagtgtcagtattctttggaggtatgccgattcaaaaggatgaagaggttctcaag
acttcgtgtccacacatcgtcgtcggtaccccgggacgtattctagctctagttaatagc
aagaagctgaatctgaagcacttgaaacatttcattcttgatgaatgtgataaaatgtta
gaatctctggacatgagacgagatgtacaggaaatatttagaaatacaccccatggaaag
caagtaatgatgttctcggccacactgagcaaggaaattcgaccggtatgcaagaagttc
atgcaggaccctatggaagtgtatgtagacgatgaagccaagctgacattgcacggattg
caacaacattatcttaagttgaaggaaaatgagaagaataagaaactgtttgaattacta
gatatactagagtttaatcaagttgtaatatttgtgaagtcagtacaaagatgcattgca
ttagctcaattgctcacagaccagaacttcccggccattggaattcaccgcaacatgtct
caagatgaacgtctgtcccgctaccagcagttcaaagatttccagaagagaatattagtt
gccacaaacttgtttggaagaggaatggatattgaacgagtcaacattgtcttcaattat
gatatgccagaagattccgacacctacctgcacagagtggcccgtgcaggtcgttttggt
accaaagggttagccatcaccatggtatctgatgaaggtgatgccaagatcctcaacgaa
gtccaagatcgtttcgacgtcaacataactgagttaccggaggttgtagagttgtctact
tacattgaagggcgatag
DBGET
integrated database retrieval system
