Colias croceus (clouded yellow): 123700782
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Entry
123700782 CDS
T08651
Name
(RefSeq) probable DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
ccrc
Colias croceus (clouded yellow)
Pathway
ccrc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccrc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
123700782
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccrc03400
]
123700782
DNA repair and recombination proteins [BR:
ccrc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
123700782
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
Motif
Other DBs
NCBI-GeneID:
123700782
NCBI-ProteinID:
XP_045504064
LinkDB
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Position
20:complement(4222850..4240762)
Genome browser
AA seq
1112 aa
AA seq
DB search
MSKRNSTAQANTLFSYFTKTPPSNKKPKPNEEKTKLISSEIGEQECKTETKKRERTPSPD
VSKETYHDDSDGSPIAPKKKKRVRLNPLDSDDSDAENKVDNKNPSPKQKTTFEKKLQDSF
KYEPGQSPKGSKNKKKENDNVAPTKSEPQETSTTDDGDWTHCKLDWLKPDKIRDAQKRRP
DDPEYDPTTLYVPQEFMKKQTPAHRQWWELKSAHYDCVLFFKVGKFYELYHMDAAVGVNE
LGFSYMKGEFAHSGFPESAYARMASTLVSKGYKVARVEQTETPEMMQDRCKKENLKSKND
KVVRREICQVSVRGAQVCGLQDNGPAESTSPYLMALAEEESNGCSTYGVCFVDTSIGLFH
MGQFKDDKHSSRLLTTLAHFPPALIVYDRKSCTARTSKLISTHCHSARREAQNMAPPEKI
LKTLAEEHYKTNDNGEWPEGLKPFLYEGDVLGLTPASNKYLAIKALGGCVAFLSDCLLDI
QILGMAQYSEYTPPDVLNTTICEKENNKWTGGSTMVLDAITLRNLRIVQDEGCLYDKLNF
CSTPMGKRLLYQWVCSPSSDLTVIKERQEAVKTLMENQDVCQEVKSILTALPDLERLLAK
VHALGNLKKSKQHPDSRAILYEEKTYSKRKVLDFISILNGFTAALKLSSMLADLDSVLLK
RISQFSPEGKFPDYRDTLKFFKESFNHAQAEKEGIILPGAGVDQEYDNTLQLIQEIEEEL
KEYLVEQEKYFKCRITYIGTDKKRYQLEIPQNAASKAGPDYHFESARKGYKRFSTDETKE
YLARMIAAEEQKRNVLKDLSRRIFEKFSSHYNQWSMAVQCLSILDVLLAFTEFARQQSGD
VCLPNVTFDADKQPYINITEGRHPCIPIITDFIPNDTVLGQDGASLLLLTGPNMGGKSTL
MRQVGLITVLAHLGSYVPAQECELSLVDRIFTRLGASDDILSGQSTFLVEMNETAAIVKH
ATVHSLVLLDELGRGTSTYDGTAIASGVCVELAERSCRVIFSTHYHTLVQHLAAHSHVRL
AHMACMVETEDTSDEDQIPEETITFLYKLSPGACPKSYGFNAARLAGVPSDITRRARSIA
NELEREATVVRAFKEVMKMGPGVREMLAGLTI
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaacgcaacagtacagcacaagcaaatacgctattcagttacttcactaaaaca
ccacctagtaataaaaagccaaaacccaacgaagaaaagacgaagttaatatcctcagag
ataggcgaacaagaatgtaaaactgaaactaagaaacgggaaagaacaccttcaccagat
gtaagtaaagaaacatatcatgatgattctgatggttctcccattgctcctaaaaagaag
aagagggttcgcctaaaccccttggactcagatgattctgatgctgaaaataaagtagac
aataaaaacccttcaccaaaacagaaaacaacatttgagaagaaattacaagacagtttt
aaatatgaaccaggccaatctccaaaaggcagtaagaataagaaaaaggaaaatgataat
gtagctccaactaagtctgaaccacaagaaacatcaactactgatgatggtgactggaca
cattgcaaattagactggctgaaaccagataagataagagatgctcagaaaaggcggcca
gatgacccggagtatgatccaactacactgtatgtccctcaggaatttatgaagaagcaa
acaccagcacacagacagtggtgggagttgaagtcggctcactatgattgtgttcttttc
ttcaaagttggtaaattctacgagttgtatcacatggatgctgctgttggtgttaatgag
cttggattttcttatatgaagggtgaattcgctcactctggcttcccggaaagtgcgtat
gcgagaatggcatcaactcttgtgtctaaaggatataaagtggcgcgcgttgaacaaacg
gagacgcctgaaatgatgcaggataggtgtaagaaagaaaacttaaagagcaagaacgac
aaagtggtgcgtcgcgagatatgccaagtgtcagttcgtggggcgcaagtatgcggtctg
caagataatggacctgcggagtctacttcaccatacttaatggctttagctgaagaggaa
tcaaatggttgcagtacatacggcgtgtgtttcgtggacacgtcaatagggctgttccac
atgggccagttcaaagatgataagcattcgtctagattgctcactacgctggcacatttt
ccacctgctttgatagtctacgaccgcaaatcatgtaccgcccgtacaagcaaattaata
tccacacactgtcatagcgcaaggcgggaggcacaaaacatggcgcctccggagaaaata
ttaaaaacattagcggaggaacattataaaactaatgataatggggaatggccggaggga
ctgaaaccttttttgtatgaaggtgatgtactaggcctgactccagccagtaataagtac
ttagctattaaagcacttggtggctgtgttgcattcctgtcagattgcctgctggatatt
cagatattgggaatggcccaatattctgaatacacgcctccagacgtgttaaatacaaca
atatgtgaaaaggaaaataataaatggaccggaggtagtactatggtgttagatgctatt
acattgagaaatcttagaattgtccaagatgagggttgtttgtatgataaactgaatttc
tgctccacacctatgggaaaacgattattataccaatgggtatgttcgccaagtagtgat
ttaacagtgatcaaggaacgacaagaggccgttaaaactttgatggaaaaccaagatgtc
tgtcaggaagttaagagcatattaacagctttacctgacttggagagattgttggccaag
gttcacgcattaggcaatttgaagaaatcaaaacaacatcctgattcccgcgcaattctc
tacgaagagaagacatattcaaagcggaaagttctagacttcatatccatattaaatggt
tttactgcggctctaaagttatcttcaatgctcgccgatttggactctgtgttgttgaag
agaatatcccagttcagtccggaaggaaagttcccggattatcgcgatacattgaaattc
tttaaggaatcatttaaccacgcgcaagctgaaaaagaaggtataattttacccggtgct
ggcgtggaccaagagtacgacaacactttgcaactcatacaagagatagaggaagagcta
aaagagtatcttgttgaacaggagaaatatttcaagtgcagaatcacatacataggaacg
gacaaaaagcgctatcaactagaaataccccaaaatgccgcgtccaaagctggtccggat
tatcattttgaaagtgctcggaaaggatacaagaggttctctactgacgaaactaaggaa
tatctagcacgcatgatagccgcagaggaacaaaaacgcaacgtgctcaaagacctcagc
cgcaggatattcgagaagttctcaagtcactacaaccagtggtcgatggcagtacaatgt
ttatccatactagatgtactgttggctttcactgagttcgcgaggcaacagagcggggat
gtttgcttgccgaacgtcacttttgatgctgataaacagccctacataaatataacagaa
ggtcggcacccctgcattcccataataactgacttcattccaaacgacacagtactggga
caagatggcgccagtctattgttattaactggtccaaatatgggcgggaaatccacgctt
atgagacaagtcgggttgatcactgttttggcgcatttgggtagctacgtaccagcgcaa
gagtgtgagctatccctcgtggatcgcattttcacccgtctcggagcatcagatgacatt
ttatctggacagtccactttccttgtggaaatgaacgagacggctgctatcgttaaacat
gctactgtgcattccttggtgttacttgatgaattgggtcgcggtacgagcacgtacgac
ggcacagcaatagccagcggcgtgtgcgtcgagttagcggaacgttcctgccgcgtgata
ttctccacgcactaccacacgctcgtgcagcacctcgccgcacactcgcacgtgcgcctc
gcacacatggcatgcatggttgaaacggaagacacgagcgacgaggaccaaatcccggaa
gaaacaataacgttcctatacaaactatctcccggagcttgtccaaagtcctatggcttc
aatgcagcaagattagccggagtcccaagtgatataacccgcagagctagaagtattgct
aacgaattggagagagaagcaacagtggtcagagcattcaaggaagttatgaaaatgggc
cccggggtcagggaaatgctcgctggcttgactatttag
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