Colias croceus (clouded yellow): 123701440
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Entry
123701440 CDS
T08651
Name
(RefSeq) exosome complex component RRP4
KO
K03679
exosome complex component RRP4
Organism
ccrc
Colias croceus (clouded yellow)
Pathway
ccrc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccrc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123701440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccrc03019
]
123701440
Messenger RNA biogenesis [BR:
ccrc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
123701440
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
123701440
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GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
ECR1_N_2
RRP40_S1
Motif
Other DBs
NCBI-GeneID:
123701440
NCBI-ProteinID:
XP_045504881
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Position
2:4285349..4290754
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AA seq
300 aa
AA seq
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MSGHVSIKLAAERVNHSVAANNEIPRFFTPGEVICGLQDFMRGHGTYVEDDCIKSSVAGV
MQKVNKLICVRPLKSRYVGEIGDVVVGRVLEVQQKRWKIETNSRLDSVLQLSSVNLPGGE
LRRRSAEDEQMMRQHLQEGDLISAEVQSIFSDGSLALHTRSLKYGKLSQGVLVKVFPSLI
RRRKNHFHNLPCGISIIVGNNGFIWISPQQQEHNMAVEDDRDDSENYLQPISRSDREAIA
RLKNCIAALVASKMMLDDTSIIFAYEESLKYEDVKDLLDPEAMLDIAFLTQHRINDVMEE
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atgtccggacacgtttctattaaattagcagccgaaagagttaatcacagtgtggctgct
aacaatgaaatacctaggttttttaccccaggcgaggttatttgtggattgcaggatttt
atgcgaggacacggaacatatgtggaggatgattgcattaaatcctctgttgctggtgtt
atgcaaaaggttaacaagttgatatgtgtgcgcccgttaaaaagtagatacgttggtgaa
attggcgatgttgttgttggaagagtgcttgaagtacaacagaaaagatggaagatagaa
actaactctcgattagattctgttctacagttatcctctgttaatttacctggtggtgaa
ctgcgtcggcgatcagctgaggatgaacagatgatgagacagcacttacaagaaggggat
ctgatcagtgcagaagtacagagtatattttctgatggttctttagccttgcacactaga
agtttaaagtatggaaagctatcacaaggtgtattagtcaaagtatttccctcattaata
aggagaaggaagaaccatttccacaacttgccatgtggaatatcaataattgtgggcaat
aacggctttatctggatcagtccacaacaacaagaacataatatggcagttgaggacgac
agagatgattcagaaaactacttacagccaatcagcagatcagatagagaagcaatagcg
cgactaaagaactgtattgcggctcttgttgcatcaaaaatgatgctcgatgacactagc
ataatatttgcttatgaagaaagtcttaaatatgaagatgtgaaggatctattagaccca
gaagccatgcttgatattgcgttcttaacacaacacagaataaatgatgttatggaagaa
taa
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