Colias croceus (clouded yellow): 123702267
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Entry
123702267 CDS
T08651
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
ccrc
Colias croceus (clouded yellow)
Pathway
ccrc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccrc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123702267
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccrc03041
]
123702267
03009 Ribosome biogenesis [BR:
ccrc03009
]
123702267
Enzymes [BR:
ccrc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123702267
Spliceosome [BR:
ccrc03041
]
Complex A
U2 snRNP components
U2 related factors
123702267
Complex B
123702267
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
123702267
Ribosome biogenesis [BR:
ccrc03009
]
Eukaryotic type
90S particles
Helicases
123702267
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
nSTAND3
SRP54
ABC_tran
Flavi_DEAD
HTH_IclR
TsaE
T2SSE
AAA_16
AAA_25
Motif
Other DBs
NCBI-GeneID:
123702267
NCBI-ProteinID:
XP_045505915
EnsemblRapid:
ENSCEUG00000014719
LinkDB
All DBs
Position
23:complement(7454887..7465966)
Genome browser
AA seq
736 aa
AA seq
DB search
MSKRRIEVMDPFIKKKREEKAAAAAKSGSSGESSSDTVATLGTAMAPTATSTPGINPYTG
LPHSPRYHELLRRRLGLPVWEYKNDFMRQLNTHQCVVLVGETGSGKTTQIPQWCVEFASI
TPGKSKGVACTQPRRVAAMSVAQRVAEEMDVALGQQVGYSIRFEDCSGPQTVLKYMTDGM
LLREAMSDPMLEQYRVILLDEAHERTLATDILMGVLKEVIKQRPDLKLVIMSATLDAGKF
QQYFDNAPLMNVPGRTHPVEIFYTPQPEKDYLEAAIRTVIQIHLCEEVAGDILLFLTGQE
EIEDACKRIKREIDNLGPDAGELKCIPLYSTLPPNLQQRIFEPAPPNRANGAIGRKVVVS
TNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGK
CFRLYTEKAYKNEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRAL
ELLNYLAALDDDGNLTDLGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCF
VRPNEARKAADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDPHWCYDNFINYRSLKSGDNV
RQQLSRIMDRFGLKRTSTEFTSKDYYINIRKALVNGFFMQVAHLERSGHYLTVKDNQIVQ
LHPSTCLDHKPDWVIYNEFVLTTKNYIRTVTDIKPEWLLRIAPQYYELNNFPACEARRQL
ELLQARLDSKPYQEGF
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaacggagaattgaagtaatggatccttttataaagaaaaaacgggaggagaaa
gcagcagctgcagccaagtcaggcagtagcggggaatcgtcgtcggacacggtggccacg
ctcggcactgcgatggcgccaacggctacgagcacaccagggatcaacccgtatactggt
cttccacactcgccgcgataccacgagctgctccgacggcggctcggcctgcccgtgtgg
gaatacaagaacgacttcatgcgacaactgaacacgcaccagtgtgttgtgctcgtcgga
gagacgggctctggcaaaaccacacaaataccacagtggtgtgtcgagtttgcgtctata
acacccggcaagtccaagggagtcgcctgtacacagcccagaagggtagccgctatgtcg
gtagctcagagagtcgcggaagaaatggacgtagcgctcggacagcaagttggttacagc
atccgtttcgaagactgctccggacctcaaacagtgctgaaatacatgacggacggtatg
ttgctgcgagaggccatgtcggatccgatgttggaacagtacagagtaattctactcgac
gaggctcacgagaggacgctagcgacggatatactcatgggtgtgttgaaagaagtgatc
aaacagcggccggacttgaagctagttattatgtccgctacgttggacgcaggcaagttc
cagcagtacttcgacaacgcaccgttgatgaatgtgcccggtagaacgcatcccgtagag
atattctacacgccacaaccggagaaagattatttggaagcggcaatacggacggttata
cagatacatttgtgcgaagaagtggcgggtgatatactgctcttcctaactggtcaagag
gagatagaagacgcgtgtaaaagaattaagagagaaattgataatttgggtccagatgct
ggtgaattgaaatgtattcctctatattcaacgttaccaccgaacttgcaacagcgtatc
ttcgagccagcgcctccgaatcgtgcgaacggtgcgatcggacggaaagtcgttgtctca
actaacatagcggaaacgtcgctaacaatagacggtgtagtgtttgtgatcgatcccggt
ttcgcgaagcaaaaagtgtacaatccgcgtattcgtgtggaatcattactagtgtctccg
ataagtaaggcgtcagcgcaacaaagggccggtcgtgcggggaggaccaggccagggaag
tgcttcaggctgtacacggagaaggcgtacaagaacgagatgcaggataatacgtatccg
gagattttgagatcgaacttaggatctgtagttttgcagttgaaaaagctgggcatcgat
gacctcgtgcactttgacttcatggacccgcccgccccggagaccctcatgcgcgcgctc
gagctgctcaactacctcgcagcgctcgacgacgacggcaacctgacggacctgggcgcg
gtgatggcggagttcccgctcgacccacaactcgccaagatgctgatcgcctcgtgcaat
cacaactgctccaatgagatactgtccatcaccgccatgctgtctgtgccgcaatgcttc
gtccggccgaacgaagcccgcaaagcggccgacgaggccaagatgcggttcgcgcacatc
gacggcgatcacctcacgctgctcaacgtgtaccacgctttcaagcagaacatggaggac
ccgcactggtgctacgataacttcatcaactacagatctctgaaatcgggcgacaacgtg
cggcaacagctcagtaggattatggacagattcggcttgaagagaacgagtacggagttt
actagcaaagactattacattaatataaggaaagcgctcgtcaatggattctttatgcag
gtggcccacttagagcgaagcggtcactatctaacggttaaggacaatcagatagttcaa
ctgcatccgtccacgtgcctagatcacaagccggactgggtcatatacaacgagtttgtg
ctcaccaccaagaattatatacgcaccgtcacggatatcaagccggagtggctgctgcgc
atcgccccgcagtactacgagctgaacaacttccccgcgtgcgaggcgcggcgccagctc
gagctgctgcaggcgcggctcgactccaagccctaccaggagggcttctag
DBGET
integrated database retrieval system
