Colias croceus (clouded yellow): 123705844
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Entry
123705844 CDS
T08651
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
ccrc
Colias croceus (clouded yellow)
Pathway
ccrc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccrc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123705844
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccrc03041
]
123705844
Enzymes [BR:
ccrc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123705844
Spliceosome [BR:
ccrc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
123705844
Complex C
U4/U6.U5 tri-SnRNP related factors
123705844
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
Flavi_DEAD
AAA_30
Cas3-like_C_2
T2SSE
SRP54
Motif
Other DBs
NCBI-GeneID:
123705844
NCBI-ProteinID:
XP_045510850
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All DBs
Position
3:complement(7841877..7845288)
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AA seq
886 aa
AA seq
DB search
MDKRGKRHHSSSDSDSVEESRLKDLKERDEFTKRLRKRDEEKVKKVTEVTSKRSYEEAAK
RLKLEAEDRDKILPKLRIQSRRKYLQKRKDDKVVELEDDIADDEYLFDESVLTEREKKDR
EHKKTILKLAKEHEKARELENIQRYHMPQDLGKGEKGEYIEVDENEKLPHSEQRKWEQEQ
IKSAFFKFGAKDAKAQDEYELLLDEQIDFIQALQLEGNKEKKEEKEVSEFQKMRMTIEET
KKSLPVYPFRDSLIEAIKNYQILIVEGETGSGKTTQIPQYLHEAGFTEEGKKIGCTQPRR
VAAMSVAARVAQEMNVKLGNEVGYSIRFEDCTSDRTVIKYMTDGTLHREFLSEPDLASYS
VMIIDEAHERTLHTDILFGLVKDITRFRPDLKLLISSATLDAEKFSSFFDEAPIFRIPGR
RFPVDIYYTKAPEADYIDACVVSVLQIHATQPLGDILVFLTGQEEIETCVEMLQERTKRL
GKKLKELVILPVYANLPSDMQAKIFEPTPEGARKVVLATNIAETSLTIDNIIYVIDPGFA
KQNNFNSKTGMESLMVVPISKASANQRAGRAGRVAPGKCFRLYTAWAYKYELEDNTVPEI
QRINLGNAVLTLKALGINDLIHFDFLDPPPHETLVLALEQLYALGALNHHGELTKAGRRM
AEFPTDPMLAKMLLASEKYKCSEEIVTIAAMLSVNSSVFYRPKDKIIHADTARKNFFHGS
GDHLTLMNVYNQWVESEYSVQWCYENFIQYRSMKRARDVRDQLAGLMDRVEIEMVSSLAE
DANIRKAITAGYFYHIAKFSKGGHYKTVKHNQTVMIHPNSALFEELPRWVIYHELVFTSK
EFMRQVTEIESKWLLEVAPHYYKARELEDSTNKKMPKTIGKSATKQ
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atggataagcggggcaaaagacaccattcgtcgtctgattctgatagtgttgaagaaagt
cgccttaaggacttaaaagaacgagatgagtttaccaaaagattacgaaaacgtgatgaa
gaaaaggtcaagaaagtaactgaagttaccagtaagagatcgtatgaagaagcagcaaag
cggctcaaattagaagcagaagatagagacaaaattttaccaaaacttcgtattcaatcg
cgaagaaaatatttacaaaaaagaaaagacgataaagttgttgaacttgaagatgatatt
gctgatgatgaatacctttttgatgaaagcgtacttacagaaagagagaagaaagataga
gagcacaagaaaacaatattgaaattagctaaggaacatgagaaggcacgagagcttgaa
aatatacaaaggtatcatatgccacaagatcttggcaaaggggaaaaaggtgaatacatt
gaagttgatgaaaatgaaaagttgcctcattcagaacaaagaaagtgggagcaagaacaa
attaagtctgcattctttaaatttggtgcaaaagatgcaaaagctcaagatgaatatgaa
ttacttctggatgaacaaattgactttatacaagcacttcaacttgaaggtaacaaagaa
aagaaagaagaaaaagaagtttctgagtttcaaaaaatgagaatgactatagaggaaaca
aaaaaatcacttccagtttatccttttagagattctctcatagaagcaataaagaattac
caaatcttaattgtagaaggtgaaacaggatctggcaaaacaacccaaatccctcaatac
cttcatgaagctggctttactgaagaaggtaaaaaaattggatgtacacagccaaggagg
gttgcagctatgtctgttgctgctagagttgcccaggagatgaatgtcaaacttggaaat
gaagtaggttatagtattcgttttgaagattgtacttcagacagaactgtcatcaaatac
atgacagatggtacattacacagagaatttttgtctgaaccagatcttgcatcctacagc
gtcatgatcattgatgaagcgcatgaacgtaccttacatactgatattttatttggtttg
gttaaagatataacaaggttcagaccagatttaaaacttctcatatccagtgctacatta
gatgctgagaaattttcgtccttttttgacgaagcacctatatttagaatcccaggccgg
agattccctgttgatatctattatacaaaagcacctgaagcagattacattgatgcctgt
gtagtctcagttttacaaatacatgcaacacaaccattaggagatattttagtattcctt
actggccaagaagaaattgagacatgtgttgagatgttgcaagagagaacaaaaaggttg
ggtaaaaagctaaaagaacttgtaatactacctgtttatgcaaatttacctagtgacatg
caagcaaagatatttgaaccaactcctgaaggtgcacgaaaagtggtacttgctactaat
atagcggagacatcacttactattgacaatattatttatgttattgaccctggatttgct
aagcaaaataattttaattctaaaactggtatggaaagtttaatggttgtacctatttct
aaagcttcagctaatcagagagctggcagagcagggcgagtggctccaggaaaatgtttc
agactgtatactgcttgggcatacaagtatgaacttgaagataacactgtaccagaaata
cagagaataaatttaggaaatgcagtgcttacattgaaagctttgggaatcaatgactta
atacattttgacttccttgatcctcctcctcatgagaccttagtgttagctttggaacag
ctatatgctcttggtgctttgaatcatcatggagagttaactaaagcaggacgacgaatg
gctgagtttccaacagaccccatgcttgcgaaaatgctgttagctagtgaaaagtataaa
tgttcagaagaaattgtaactatagcagccatgctgtcagtaaatagttcagtgttttat
agaccaaaagataaaataatccatgcagatacagctaggaaaaactttttccatggcagt
ggggatcatttaacactgatgaatgtgtataaccaatgggttgaatctgaatattctgta
caatggtgttatgaaaattttattcaatataggtcaatgaagcgtgcacgtgatgtgcga
gaccaacttgctggactaatggatcgagttgagatagaaatggtatccagtttagcggag
gatgctaatattcgtaaggccatcactgcaggatacttttatcatatagcaaaattttcc
aaaggtggccactataaaactgttaaacataaccaaactgtaatgattcatccaaacagt
gccttatttgaagaactgccaagatgggtcatataccatgaactagtatttacatctaaa
gaatttatgagacaagtaacagagattgaaagtaaatggctcttagaagttgcacctcat
tactataaagctagagaattagaagattcaacaaacaagaaaatgccaaaaactattgga
aaatctgccactaaacaataa
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