Colias croceus (clouded yellow): 123706060
Help
Entry
123706060 CDS
T08651
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
ccrc
Colias croceus (clouded yellow)
Pathway
ccrc03020
RNA polymerase
ccrc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccrc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
123706060
09124 Replication and repair
03420 Nucleotide excision repair
123706060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccrc03021
]
123706060
03400 DNA repair and recombination proteins [BR:
ccrc03400
]
123706060
Enzymes [BR:
ccrc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
123706060
Transcription machinery [BR:
ccrc03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
123706060
DNA repair and recombination proteins [BR:
ccrc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
123706060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
123706060
NCBI-ProteinID:
XP_045511145
LinkDB
All DBs
Position
3:9085371..9089097
Genome browser
AA seq
1176 aa
AA seq
DB search
MYDTEDDQYEEEDVEEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DSPPIELQAEAQHSSGEIEVPPKYHLKFDQIYLSKPTHWEKDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIVKENEDPIETQHQKTFIGKIPIMLRSTYCLLSNLTDRDLTELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAYKTEIRSCLEHSSRPTSTLWVNMM
ARGGQSIKKSAIGQRIVAIVPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLLKEVRMYAQ
KFIDKGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSE
VSMIRDIRDREIRIYTDAGRICRPLLIVENGALLLKKKHIDQLKERDYNNYGWQNLVASG
VVEYIDTLEEETVMIAMSPDDLAQVKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQS
PRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSI
VAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKPTRQTCQG
MRNALYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELEGTTKRYSKRDASTFLRNS
ETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCE
GLTPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQKISSLLQEYG
YHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRA
RDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFECKG
CKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMVIA
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgtatgacactgaagatgatcaatatgaggaagaagatgtggaagaaatatcatcggaa
ctatggcaagaagcttgttggatcgtcatcaatgcatattttgacgagaaaggtttagta
agacaacagttagatagttttgatgaatttattcagatgtccgtgcaacgtatagttgaa
gattctccacctattgaacttcaagcagaagcacaacattcatctggtgaaatcgaagta
cctcccaagtatcatttaaagttcgatcagatttacctttcaaaaccaacccattgggaa
aaagacggcgctccatcgcctatgatgcctaatgaggcacgtttgcgtaatttgacttat
tctgctcctttgtatgttgatatcactaaaacaattgttaaagaaaatgaagatccaata
gaaacccagcatcaaaaaacttttattggtaaaatccccatcatgttgaggtccacatac
tgtctgctgagtaatcttactgacagagatttaactgaactgaatgagtgcccacttgac
cctggtggttattttattattaacgggtctgagaaagtgttgattgctcaagaaaaaatg
gcaacaaatactgtatatgtattcagcatgaaagatggtaaatatgcttataaaactgaa
attcgttcctgtctggaacacagctcaagacctacatcaactctttgggttaacatgatg
gctcgtggtgggcaaagcattaaaaaatctgctattggacaaagaattgtggccattgta
ccctatattaaacaggagatacccataatgattgtattccgtgctcttggattcgtagca
gatagagatatattggaacacatcatttatgattttgatgatcctgaaatgatggaaatg
gtaaagccctctttggatgaagcttttgttattcaggaacaaaatgtggctcttaatttt
attggagcgagaggtgcaagacctggtgtaactaaggaaaggcgtataaaatatgcaagg
gagattttacaaaaagaaatgttgccacatgttggtgtgtctgatttttgtgaaacaaag
aaggcttatttcttaggatatatggtgcatagattgcttctggctgcattgggtcgtcgt
gaattagatgacagagatcactatggaaataaaagacttgacctagcaggccccctgttg
gctttcctgtttcgggggctatttaagaatctgcttaaagaagtgagaatgtatgcgcag
aaatttattgacaaaggaaaagatttcaaccttgaattagctatcaaaactaaaattatc
actgatggtttgagatactcattggctactggaaattggggtgatcagaaaaaggctcat
caagcaagagctggagtgtcacaagtattgaaccgtttaacatttgcgtccacactttct
catttgcggcgtgtgaattcacctattggtcgtgatggtaaattagctaagcctcgccag
ctccataacaccttatggggaatgatttgtccagctgaaacacccgaaggtgctgctgtt
ggacttgtaaagaatttggctttaatggcttatatttctgttggaagtcaaccttctcca
atcttggagttcttggaggaatggtctatggaaaatttggaagaaatagcgccatcagca
attgcagatgctacaaaaatatttgtaaatggttgttgggtcggaattcatagagatcct
gaacagttgatggcaactttaagaaaactgagacgtcaaatggatattattgtgtctgaa
gtcagtatgattcgtgatataagagatagagaaataagaatatatactgatgcaggtaga
atttgtcgtcctttgttgattgtagagaatggagcactacttcttaagaagaaacacata
gatcaattaaaagaaagggattacaataactatggttggcaaaacttagtagctagtggt
gttgttgaatacattgatacattggaagaagagactgttatgatagcaatgagtcctgat
gatcttgctcaagtaaaagaatatgcctactgtactacatatactcattgtgaaattcat
ccagccatgattttaggagtttgtgcatcaattattccattcccagatcataaccaaagc
ccaagaaatacttatcaaagtgctatgggtaaacaagctatgggtgtttatatcaccaac
ttccatgtaagaatggacaccttagctcatgtactgtactaccctcataaaccgttagta
actacaagatctatggaatatttgcgttttagagaattacctgctggaattaattctatt
gttgctatcttatgttacacaggatacaaccaagaagatagtgtaattttaaatgcttct
gctgtagaaagaggattctttagatctgttttctatcgatcttacaaagattcggaatca
aaaagaataggagatcaggaagagcaatttgaaaaaccaaccagacaaacttgtcaggga
atgagaaatgctttgtatgataagttggatgatgacggaattatagctcctggtatcaga
gtttcaggggatgatgtagtcatcggtaaaacaattactttacccgaaaatgatgatgag
ttagaaggaacaactaaacgctattcgaagcgtgatgcttctacattcttgcgtaatagt
gaaactggtattgttgatcaagtaatgctaacattaaatagcgaagggtataaattctgt
aaaataagagtgcgatccgtacgtattcctcaaattggcgacaagtttgcttctcgtcac
ggtcaaaaaggtacttgcggtatacagtacagacaagaagatatgccttttacttgcgaa
ggtttaactcccgatattattattaatcctcacgccattccgtctcgtatgacaattggt
cacttgatcgagtgtattcaaggcaaagtatcatcaaataaaggcgagattggagatgcc
acgccatttaacgatgctgtaaatgtgcaaaaaatttcttcactgttacaagaatatggc
tatcatctacgtggtaacgaagttatgtacaacggtcacactggcagaaagattaatgct
caggtttttctgggccctacatattatcagcgtcttaagcacatggtggacgataaaatt
cactcaagagccaggggacctgtgcagattttagtccgtcaacctatggaaggtagggcg
agagatggaggtcttcgtttcggtgaaatggaacgtgattgtcaaatcgctcatggcgct
gcacaatttctaagagagcgtctattcgaagtatccgatccatacagaattcatgtttgc
aatttttgtggtttgattgcaatagctaatcttcgaaataatacatttgaatgcaaagga
tgcaaaaacaaaactcagatttcgcaagttagacttccttatgcagctaaacttttattc
caggagttaatgtcaatgaatatagcaccgcggctgatggttattgcttaa
DBGET
integrated database retrieval system
