Colias croceus (clouded yellow): 123706179
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Entry
123706179 CDS
T08651
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ccrc
Colias croceus (clouded yellow)
Pathway
ccrc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccrc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123706179
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccrc03019
]
123706179
03041 Spliceosome [BR:
ccrc03041
]
123706179
03009 Ribosome biogenesis [BR:
ccrc03009
]
123706179
03016 Transfer RNA biogenesis [BR:
ccrc03016
]
123706179
Enzymes [BR:
ccrc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123706179
Messenger RNA biogenesis [BR:
ccrc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
123706179
Spliceosome [BR:
ccrc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
123706179
Complex C
U4/U6.U5 tri-SnRNP related factors
123706179
Ribosome biogenesis [BR:
ccrc03009
]
Eukaryotic type
Pre-60S particles
Helicases
123706179
Transfer RNA biogenesis [BR:
ccrc03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
123706179
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
ATPase_2
DUF3379
Motif
Other DBs
NCBI-GeneID:
123706179
NCBI-ProteinID:
XP_045511302
LinkDB
All DBs
Position
1
Genome browser
AA seq
1033 aa
AA seq
DB search
MADLNNLFDCFEDPSSSEVAIQLPNLENDKPNIKEEQTPAKKRPHEEVEYADTELKPEDN
KKIKTGEEEIESIGDLKLDLANSRIVIHTLETHEGCTHEVAIPPNHEYTPLVPISSEPAK
QYSFILDPFQKEAIMCIDNLQSVLVSAHTSAGKTVVAEYAIALSLKKKQRVIYTTPIKAL
SNQKYREFSEEFHDVGLITGDVTINPSASCLIMTTEILRNMLYRGSEIMREVGWVVFDEI
HYMRDKERGVVWEETLILLPDNVHYVFLSATIPNARQFAEWVCRLHSQPCHVVYTEYRPT
PLQHYIFPAGGDGIHLVVDEKGQFKEDNFNTAMAVLSNAGDAGKGDQRGRRGGPKGNNNT
NIFNIVKMIMERNFAPVIIFSFSKKDCELYAMQMAKLDFNTIEEKKLVDEVFNNAMDVLT
EEDRKLPQVENVIPLLRRGIGIHHGGLLPILKETIEILFGLGLIKALFATETFAMGLNMP
ARTVVFTNCQKFDGRDFRFITSGEYIQMSGRAGRRGLDDKGIVILMIDQKVAPATVKGMV
QGKADPINSAFHLTYNMVLNLLRVEEINPEYMLERSFYQFQNQAAIPDLIDKVKAKQKEY
DALSIDEENSIASYCNIRSQLDLLGAQFRSFITRPEYLKPFLQPGRLVKIKTEKYEYDWG
IIVNFRHKTGKGKKGQDENPLTADTVILVDILLHVKKGKGDEPESNVPCPPGESGDVEVV
PVLHTLIYQISSLRVYYPKDLRPSDSRKSVLKTINEVKKRFPEGPPLLNPIKDMKIEDSV
FKECVDKIKIFEDRLYAHPLHKDKNRAALTSAYEKKQEMFEDLKQVKQELHKAKSILQMD
ELKKRKRVLRRMGYCTMADVIEMKGRIACELSSADELLLTELIFNGVFNNLTPEQSASLV
SCFVCDENSTQTSSTGEELRGVLRQLQEYARRIAKVSIDAKMALDEDEYVGKFKCTLMDV
VLAWAKGASFLQICKMTDVFEGSIIRCMRRLEEVLRQLCQAAKNIGNTDLENKFSEAIKM
LKRDIVFAASLYM
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atggcagatttaaataatttatttgactgtttcgaagatccatcttcaagtgaagtcgct
attcagttgcccaatcttgaaaatgataaaccgaatattaaagaagaacaaacgccagcc
aagaaaagaccgcacgaagaagttgaatatgcagatacagaactaaaaccagaagataat
aaaaaaatcaaaacaggtgaagaagaaattgaatcaattggggacttaaagttagatcta
gctaactcacgtattgttatacacacattggaaacccatgaaggatgtacccatgaggta
gcaattcctccaaatcatgagtatacaccgttagtaccaatatcgtcagaaccggctaag
caatatagttttatattggatccctttcaaaaggaagcaatcatgtgtatagataatttg
caatcggtgcttgtatcagctcacacatcagcaggaaagactgttgttgcagagtatgct
attgctttgtcacttaagaaaaaacaaagagtaatatataccacaccaatcaaagcactt
tcaaatcagaaatacagagagttttctgaagagttccatgatgttggtttgataactggt
gatgtgacaatcaatccatcagcttcatgtcttattatgacaactgagattctaaggaat
atgttatatagaggatcagaaatcatgagagaggtgggatgggtagtgtttgacgaaatc
cactacatgagggataaagaaagaggagtggtgtgggaagaaacactaatccttctcccc
gacaacgtgcactacgtgttcctatccgctactatcccgaacgcgcggcagttcgccgag
tgggtgtgccgcttgcactcgcagccgtgccacgtggtctacacggagtataggcccacg
ccgctgcagcattatatcttcccagctgggggtgatgggatacatcttgttgttgatgag
aagggtcagttcaaagaggataattttaacacagcaatggctgtactaagcaatgcaggt
gacgcaggtaaaggtgaccaacgcgggcgtcgaggcgggcccaaaggaaacaataatacg
aacattttcaacatcgtcaagatgattatggaaagaaatttcgcgcctgttatcatattc
agttttagtaagaaggattgtgagctgtatgctatgcaaatggctaaattggactttaat
accattgaagaaaagaaattagtagatgaagtgttcaacaacgctatggacgtattaaca
gaggaggaccgtaaattgccacaagtggaaaatgttattccgttattgagacgcggtatc
ggtatacatcatggtggtctactgcccatacttaaggaaaccatcgagattctcttcggt
ttggggcttataaaggctcttttcgctacagagacctttgcgatgggtctcaacatgcca
gccagaactgttgtgtttacgaattgtcaaaaattcgacggaagagatttccgattcata
acatcaggcgaatacatccaaatgtcgggtcgtgcgggtcggcgtggtctcgacgacaag
ggtatcgtgatactcatgattgaccagaaagtagcgcccgctactgtgaaaggcatggtg
cagggcaaagccgatcctattaattcagctttccatctcacttataatatggtactgaat
ttattacgtgtagaagaaatcaatcccgaatatatgttggagagaagtttctaccaattc
caaaatcaagctgccattccagatctcatagataaggtaaaagcgaaacaaaaagaatac
gacgcgctaagcatagacgaagagaattcaatcgcatcgtattgtaatattcgctcgcaa
ttagacctattgggagcacagtttagatcttttattacgcgtccggaatatcttaaacct
ttcttgcagcctggacgacttgttaagataaaaacagaaaagtacgaatatgactggggc
ataatagtgaatttccggcataaaacgggcaaaggcaagaaagggcaagatgagaatccc
ctcacggctgatacagtaatacttgtggatatattgctgcatgttaaaaaggggaaggga
gatgaaccggagagcaatgttccgtgccccccgggtgagtctggagatgtggaagtagta
ccagtattgcacacgctaatatatcaaataagttcgcttcgtgtgtactatcctaaagat
ttacgaccatccgacagccgtaaatcggttttgaaaacaataaacgaagtgaagaaacga
ttcccagaaggcccgccgctattgaatcctataaaagatatgaaaattgaggattccgta
tttaaagaatgtgtggataaaataaaaatttttgaagacagattatacgcccacccactg
cacaaagacaagaaccgcgcagcgctaacaagcgcatacgaaaagaagcaagaaatgttc
gaagatctgaaacaagttaaacaggagctgcataaagctaagagtatattacaaatggac
gaattgaagaaacggaaacgtgtgcttcgacgaatgggatattgtactatggctgatgtt
attgagatgaagggacggatcgcttgcgaactgagcagtgctgacgaattactactgacc
gagttgatattcaacggtgtgttcaacaacctcacaccggaacagagcgcgtcgctcgtg
agctgtttcgtgtgcgatgaaaattctacacaaacgtcctctactggggaggagttgcgt
ggagtacttagacagctacaggaatacgcgcgtcgcatagcaaaggtatcaatagacgcc
aagatggcgctggacgaggacgagtacgtgggcaagttcaagtgcacgctcatggacgtt
gtgctcgcgtgggccaagggcgcgtccttcctgcagatatgcaagatgactgacgttttt
gaaggatcaataatccgttgtatgcggcgtctggaagaagtgttacggcagttgtgtcaa
gcggccaagaacattggtaacacagatttggagaacaagttcagtgaagcgatcaaaatg
ttgaagagggacattgtgttcgctgccagtttatatatgtag
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