Chlamydia crocodili: H9Q19_03670
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Entry
H9Q19_03670 CDS
T08674
Name
(GenBank) VacB/RNase II family 3'-5' exoribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ccrd
Chlamydia crocodili
Pathway
ccrd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H9Q19_03670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccrd03019
]
H9Q19_03670
03016 Transfer RNA biogenesis [BR:
ccrd03016
]
H9Q19_03670
Enzymes [BR:
ccrd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
H9Q19_03670
Messenger RNA biogenesis [BR:
ccrd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
H9Q19_03670
Transfer RNA biogenesis [BR:
ccrd03016
]
Prokaryotic type
tRNA degradation factors
H9Q19_03670
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
QVE48792
UniProt:
A0ABX8CHY7
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All DBs
Position
complement(800913..802946)
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AA seq
677 aa
AA seq
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MKKIRKRRPKGFRRSSKQILISGVLFVHAKKGFGFVTPDHPEEYPFDIFIPARDLKGALD
GDHVIVSLFPNSKEGEKRKGVIHQVVSRGKTVLVGTITSVIDATTAFVCVNALGPDIPVK
AKLLPKRSYKLGDRLLLSTPAWKEKPESKEPPPLEMLEFIGNISNAKSDFPCIKAEYAIE
EDFPEAVIEETSHFSQKHISQALRSRKDLRDLLCFTIDSITAKDFDDAVSLTYDNNDNYI
LGVHIADVSHYVTPHSALDQEASKRCNSIYFPGKVIPMLPSALSDNLCSLKPNVDRLAVS
VFMTFTKEGHLSDYEVFRSVIRSKYRMTYDEVDEIVENKQPHPISKTLLAMAELSEKFAD
IREKRGCIRLVLPSFTMSLDNLQEPVALIETRQTLSHKLIEEFMLKANEVIAYHISHQGV
TLPFRIHESPNDESLLSFQEMAKAMGFDIIMTPAQEPDYQYLLQESTAGHPLESILHSQF
VRSMKTASYSTENKGHYGLKLDFYTHFTSPIRRYIDLVVHRLLFHPMSIEETRLEHIVRA
CSTQERIAAKAEFAFENLKKTRFLDKFLKEQPETIYKGFIITTNPEGIFFTVPEFCQEGC
IPAAQLPKEYSLKKKTSPDDLPSKMRPGAIIEIKLAEVNLLNQAITWSLVTKTPKTGSKK
QSNPEKKPRTRRKRKTE
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaaaaataagaaaaagaagacctaaaggctttagaagaagctctaagcaaatctta
atttctggtgtcctatttgtccatgccaagaaaggttttggattcgtcacacctgatcac
cctgaggaatatccttttgatatttttattcctgcaagggacctaaaaggtgctttagac
ggagaccatgtaattgtctctcttttcccaaattctaaagaaggggaaaaaagaaaggga
gtaattcaccaagttgtatctagaggaaagacggttctcgtaggaactataacctcggta
attgacgcaacaactgctttcgtttgtgttaacgccttaggaccagatatccctgtaaaa
gcaaaacttctccccaaacgctcctataaacttggggatcgtttattattaagtacccct
gcatggaaggaaaaacctgaatctaaagaacctcctccattggaaatgctcgaatttatc
ggaaatatctccaatgccaaatcagacttcccttgtataaaagcagaatatgctattgaa
gaagacttcccagaagctgttattgaagaaactagccatttctcccaaaagcatatcagt
caagctctacgatcacgaaaagaccttcgcgatcttttgtgttttactattgattcgata
accgcaaaagattttgatgatgccgtatcattaacttatgataacaatgacaattatatt
cttggtgttcatattgcagatgtctctcactacgtgacaccacattctgctttagatcaa
gaagcgagtaaaagatgtaactctatttactttcctggaaaagtaatcccgatgttgcct
tcagcactttctgacaacctttgcagcttaaaacctaatgtagatcggcttgcagtgtcg
gtatttatgacttttactaaggaaggacatttatctgattacgaagtatttcgtagcgtg
attcgaagcaaataccgtatgacctacgatgaagtagatgagattgtagaaaacaaacag
cctcatcctatatcaaaaactctccttgctatggcagaattaagcgagaaattcgcggat
attcgagaaaaacgtggttgcatccgactcgttctaccttcatttactatgtcgttagat
aatcttcaagaacctgtagctcttatagaaacacgacaaactctatcacataaactcatc
gaagagtttatgcttaaagctaacgaagtgattgcctatcatatttcccatcagggagtc
actctaccatttagaattcatgaatctccaaatgatgagagcctactctcattccaagag
atggcaaaagctatgggttttgatattatcatgacaccggctcaagaacctgattaccaa
tatttactacaagaaagcactgcagggcatcctttagaatcaattctacactcacagttt
gtacggagtatgaaaacagcctcatattcaacagaaaataaggggcattacggattaaaa
ctcgatttctatacacattttacaagccctattcgtcgctacattgatcttgttgttcat
agacttctatttcatcctatgtctatagaagaaactcgcttagaacacatcgtaagagcc
tgctcaacacaagaacgcatagctgcaaaagccgaatttgctttcgaaaatcttaagaag
acccgtttcttagataagttcttaaaagaacaacctgaaacaatttataaaggctttatt
attacaacaaatcctgaaggaattttcttcacggttccagagttttgccaagaaggttgt
atcccagcagcgcaactgcccaaagaatattccttgaaaaagaaaacttctcccgatgat
cttccaagcaaaatgcgtcctggagcaataatagagataaaacttgcggaagtgaacctt
cttaatcaggcaattacctggtctttggtaaccaaaacaccaaaaacaggtagtaaaaaa
caatctaatccggaaaaaaaacctagaactagaagaaaaaggaaaacagaataa
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