Cariama cristata (Red-legged seriema): 104159143
Help
Entry
104159143 CDS
T08341
Symbol
PABPC1
Name
(RefSeq) polyadenylate-binding protein 1
KO
K13126
polyadenylate-binding protein
Organism
ccri
Cariama cristata (Red-legged seriema)
Pathway
ccri03015
mRNA surveillance pathway
ccri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccri00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104159143 (PABPC1)
09123 Folding, sorting and degradation
03018 RNA degradation
104159143 (PABPC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccri03019
]
104159143 (PABPC1)
03041 Spliceosome [BR:
ccri03041
]
104159143 (PABPC1)
Messenger RNA biogenesis [BR:
ccri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
104159143 (PABPC1)
mRNA cycle factors
Stress granule specific factors
104159143 (PABPC1)
Spliceosome [BR:
ccri03041
]
Complex C
Other components
Complex C specific factors
104159143 (PABPC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_5
RRM_occluded
RRM_7
RBD_RDR6
RRM_3
YflT
Motif
Other DBs
NCBI-GeneID:
104159143
NCBI-ProteinID:
XP_009695272
LinkDB
All DBs
Position
Unknown
AA seq
566 aa
AA seq
DB search
MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV
CDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT
NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM
NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR
KEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK
EERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPTNQLAQL
ARPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTM
GPRPAAAATAATPAVRTVPQYKYAAGVRNPQQHLNTQPQVAMQQPAVHVQGQEPLTASML
ASAPPQEQKQMLGERLFPLIQSMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEA
VAVLQAHQAKEAAQKAVNNPTGVPSV
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgaactttgatgtcattaaaggcaaaccagtgcgcatcatgtggtctcagcgcgatccg
tctctacgcaaaagtggtgtaggaaacatcttcatcaaaaacttggacaaatcaattgat
aacaaagctttatatgacacattttctgcttttggaaacatcttatcttgtaaggtggta
tgtgatgaaaatggatccaagggttatggatttgtacattttgagacacaagaagctgca
gaaagagctattgaaaaaatgaatggtatgctgcttaatgaccgcaaagtatttgttgga
aggtttaaatcccgcaaggaacgtgaggcagagcttggagcgagagcaaaggaattcacc
aatgtttacatcaagaattttggagaagacatggatgatgagagacttaaggaactcttt
ggcaagtttggtcctgccctaagtgtgaaagttatgaccgatgagagtggaaaatccaaa
ggctttggcttcgttagttttgaaagacatgaagatgcccaaaaagcagtagatgagatg
aatgggaaagagctcaatgggaaacaaatctacgtcggccgggctcagaaaaaggtggaa
agacagacggagctgaagcgcaagtttgaacaaatgaagcaggacaggatcaccagatac
cagggtgtaaacctttacgtgaaaaatcttgatgacgggattgatgatgagcgtcttcga
aaagaattctccccatttggtacaatcactagtgcaaaggtcatgatggaaggtggccgc
agcaaaggatttggattcgtatgcttttcatcaccagaagaagccaccaaagctgtcaca
gaaatgaatggtagaattgtggctactaaaccgttatatgtagctctggcccagcgtaaa
gaagagcgccaagctcatctcaccaaccagtacatgcagagaatggcaagtgtaagagca
gtacctaatcctgtaatcaacccttaccaaccagcacctccttcaggttacttcatggca
gctatcccacagactcagaaccgtgctgcatactatcctactaatcaactcgctcaactt
gctagacctagtcctcgctggactgctcagggtgccagacctcatccattccaaaacatg
cctggtgctatccgcccagcagcacccagaccaccatttagtaccatgagaccagcttct
tcacaagttccacgagtcatgtcaacacaacgtgttgctaatacatcaacacaaacgatg
ggtccgcgtcctgcagcagcagctaccgcagctactcctgctgtacgcacagtaccacaa
tacaaatatgctgcaggtgttcgtaatcctcagcagcatcttaatacacagccgcaggtt
gctatgcagcagcctgctgtccatgtgcaaggtcaggaacccttgactgcttccatgttg
gcttctgcccctccacaagaacaaaagcagatgttaggtgaacgtctatttcctctcatt
caaagcatgcaccctactctggcgggtaagatcactggtatgttgttggagattgacaac
tctgaactcctccacatgctcgagtctcctgagtctcttcgttcgaaggttgatgaagct
gtagccgtactacaagcccaccaagctaaagaggctgctcaaaaggcagttaataatccc
actggggttccaagtgtttaa
DBGET
integrated database retrieval system
