Cariama cristata (Red-legged seriema): 104160786
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Entry
104160786 CDS
T08341
Symbol
RC3H1
Name
(RefSeq) LOW QUALITY PROTEIN: roquin-1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
ccri
Cariama cristata (Red-legged seriema)
Brite
KEGG Orthology (KO) [BR:
ccri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccri03000
]
104160786 (RC3H1)
04121 Ubiquitin system [BR:
ccri04121
]
104160786 (RC3H1)
Transcription factors [BR:
ccri03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
104160786 (RC3H1)
Ubiquitin system [BR:
ccri04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
104160786 (RC3H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-C3HC4_2
zf_CCCH_4
FYVE
zf-CCCH_4
PaaA_PaaC
Vesi_VP2
Baculo_IE-1
zf-RING_4
zf-RING_10
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
104160786
NCBI-ProteinID:
XP_009697307
LinkDB
All DBs
Position
Unknown
AA seq
1142 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQVPEQQPITLCSGAEDTKHYEEGKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGTDQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSGGILSDE
GGVDLPNRKTSALPNGIVSTGSTVTQLISRGTDSGYETALKPGKMDHLSSSAPGSPPDLL
ESVPKSSISALPVNPHPVPARAPTDLPSVSVTKQLQMVPRGSQVYNTQQADMFYQDPRGA
APPFEPAPYQQGVYYPTQSMSRFVRPPPSAPEPGPPYLDHYPPYLQDRVVSPQYTQPQQY
PPMGQPIYPPHYDSRRVYPPVQPYQREEIVRGSPVPIEIPQAAVPSYVPESRDRYQQTEG
YCSVAPHVSQIRPSCHRVXFLYCFFVVXEKKYKLLEPHPSLDELHRRRKEIMAQLEERKV
ISPPPFAPSPTLPHPFHSEEYLDEDLKVAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPK
DVVAARSVEMANVDSKAMRDQRLDMQRRAAETGDDDLIPFGDRPTVSRFGAISRTSKAMY
QNSGPMQAMAVQGATTKSIISDYNPYGTHGGWGGSPYSPHQNIPSQGRFNDRERLSMSDV
AGHGKQLPSAEREQQLRMELQQVDHQISQQTQMRGLEAVSNRLLLQREATTLAGQPQPPP
PPPKWPGMISSEQLSLELHQVEREIGKRTRELSMESQSSLDIKTKLGTSKQTENGQLEPQ
SKVPAEDLALTFSSDVPNGSALTQENIGLLSNKTASLSLSEDPEGGDNHDSQRAGVTPTS
AP
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggacggattttctctcctgcccaatttgcacacagact
ttcgacgaaacaatccgaaagcccatcagcttgggttgcggccacactgtctgcaagatg
tgcctcaacaagctccaccgtaaggcatgcccttttgaccagaccactatcaatacagac
attgaactccttcctgtgaactcagccttgctgcaactagtgggtgctcaggttcctgag
cagcagccgattactttatgtagcggagctgaagataccaagcattatgaggagggcaag
aaatgtgtggaagaattagcgttgtacctcaaaccactcagcagcgcaagaggtgtgggt
cttaacagtactactcagagcgtgctaagtcgtcccatgcaaaggaaactggtgacatta
gttcattgccagctagtggaggaagaagggcggatcagagccatgcgtgcagcacggtcg
cttggtgaaagaacagttacagagctcattcttcagcatcaaaatcctcaacagctctct
tccaacctctgggctgcagtgagagccagaggatgccagttccttggaccagcaatgcaa
gaggaggctttaaagctggttctactggctctggaagacggatctgctttgtcccgaaag
gtcttggttctctttgtggttcagagactggagccgcgatttcctcaggcttctaaaact
agcattgggcatgttgtccagcttctttacagagcctcgtgcttcaaggtgacaaagcga
gatgaggattcctccctgatgcaactgaaggaggaatttcggacgtacgaagctctgaga
agggaacatgattcccagatagttcaaatagccatggaagcaggtttacgcattgcacca
gatcagtggtcctcactgttatacggagaccaatctcacaagtcccacatgcagtctatc
attgacaagttgcagaccccagcctcatttgcacagagtgttcaggaattaactattgct
cttcagaggactggagatccagcgaacctgaatcgacttcgacctcacctagagctcctg
gcaaatattgatcccagtccagatgctccacctccaacatgggaacaactggaaaatggg
ctagttgctgtgaggactgtggttcatggcttagttgattatatccagaatcacagcaag
aaaggaacagatcagcaacagcctcctcagcacagcaagtacaagacatacatgtgccga
gacatgaaacagagagggggatgtccccgaggggccagctgcacctttgcacattcacaa
gaggagctagaaaaattccgtaaaatgaataagcgtctggttcccagaagacccctgagt
gcctccctgggccagctaaatgaggtgggcctgccttcaggaggtatcctctcggacgaa
gggggagtggacttgcccaataggaaaacttctgctctgccaaatggaattgtgtcaaca
ggcagcacagtgacgcaacttatttctcgagggactgactctggttacgaaactgctctg
aagccagggaagatggaccatctgagtagcagtgcccctggatcccctcctgacttgctg
gaatctgtccccaagagctctatttctgccttaccggtgaaccctcatcctgtccctgct
cgggcaccaacggatctgccttcggtgtctgtcaccaagcagttgcaaatggtaccacga
gggtctcaggtgtataatactcagcaagcagatatgttctatcaagatcctagaggagct
gccccaccatttgagccagcaccctaccaacaaggagtttactatcccactcagtccatg
tctcgctttgtccgacctcctccgtcagctcccgaacctggtccaccttatttagaccat
tacccaccctaccttcaggatcgtgtggtgagcccacagtacacgcagccgcagcagtac
ccccctatgggacaacccatatacccaccgcactacgacagccgtcgagtatatccccct
gtccagccatatcagcgagaggagattgtccgaggaagccctgtacccattgaaattcca
caagcagctgtaccttcctacgtacccgaatccagagacagataccagcaaacagagggt
tattgctccgtggctccacatgtcagtcagatcagaccttcgtgccacagggtatgattt
ttatattgcttttttgtagtttgagagaaaaaatacaaactacttgaacctcatcccagc
ctggatgaacttcaccgacgaaggaaggagatcatggcccagctagaagagaggaaggtg
atttctccacctccttttgcaccgtcaccaaccttgcctcatccatttcattcagaggag
tacttggatgaagacctgaaggtagctgggaaatacaaaggaaatgactacagccaatac
tctccctggtcctgtgacaccatcggctcctacattggaaccaaagatgcaaaacccaaa
gacgttgtggcagcaaggagtgtggagatggcgaacgtagatagtaaagccatgcgtgac
cagcgattagacatgcagcgaagggcagcagagaccggtgatgatgacctcattccattt
ggagaccgaccaactgtgtcgagatttggggctatctctcgtacttccaaagcgatgtac
cagaattctggtcccatgcaggccatggcggttcagggagctaccaccaaatcaatcatt
tcagactacaatccgtatggaactcacggtggctggggaggctctccatattctcctcat
caaaatataccttctcagggacgtttcaatgacagggagagactgtccatgtcagatgtg
gctggtcatgggaagcagttgccctcggctgaacgagagcagcagctgcgcatggagctg
cagcaagtagaccatcagattagccagcaaacacaaatgcgaggactagaggctgttagt
aacaggctgctgttgcagagggaggcgactaccctggcaggccaaccacagcccccaccc
cctcctcccaagtggcctgggatgatctcaagtgaacagctgagcttggagctacaccag
gtggaaagggaaattgggaagagaacccgtgagctgagcatggagagccagtcttcactg
gatataaaaaccaaactgggcaccagtaaacagacagaaaatggacaactagaaccgcaa
agcaaggttccagctgaggacctcgcactgacattcagcagtgatgttccaaatggatca
gccttgacccaggagaacattggcctcctgtcaaacaagacggcatctctcagcctctca
gaggacccggagggaggagacaaccacgactcccagagagcgggagttacgcccacgtct
gctccatga
DBGET
integrated database retrieval system
