Cariama cristata (Red-legged seriema): 104160904
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Entry
104160904 CDS
T08341
Symbol
PAN2
Name
(RefSeq) LOW QUALITY PROTEIN: PAB-dependent poly(A)-specific ribonuclease subunit PAN2
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
ccri
Cariama cristata (Red-legged seriema)
Pathway
ccri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104160904 (PAN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccri03019
]
104160904 (PAN2)
Enzymes [BR:
ccri01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
104160904 (PAN2)
Messenger RNA biogenesis [BR:
ccri03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104160904 (PAN2)
mRNA degradation factors
3'-5' decay
Pan complex
104160904 (PAN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAN2_N
UCH_1
RNase_T
UCH
WD40_CDC20-Fz
WD40_like
Beta-prop_THOC3
Beta-prop_WDR90_POC16_2nd
Motif
Other DBs
NCBI-GeneID:
104160904
NCBI-ProteinID:
XP_009697458
LinkDB
All DBs
Position
Unknown
AA seq
1040 aa
AA seq
DB search
FDLHEEMLWVGNHGGHATSFFGPTLERYSSFQVNSSDDIRQIQSLENGVLFLTKTNLKYM
SRGGLIIFDYLMDESEDMHSLLLTDSSTLLVGGLQNHVIEIDLNTVQETQKYTVEVPGIT
IMRQSNRFFFCGHTSGKVSLRDLRTFVVEHEFDAHSGSLSDFDVHGNLLVTCGFSSRMNG
LACDRFLKVYDLRMMRATTPLQVHIDPFFLRFIPTYTSRLAIISQTGQCQFCEPTGLANP
ADIFHVNTVGPLIMTFDVSASKQALAFGDSEGCVHLWADSPEVTFNAYSRETDFALPCIV
DTLPHLDWNQDLVPLSLIPVPLTSDTLLSDWPTANSAPAPRRAPPVDPEILRTMKKVGFI
GYAPNPRTKLRNQIPYRLKETDNEFDSFSQVPESPIGREEEPHLYMVAKKYRKVTIKYSK
LGLEDFDFKHYNKTLFAGLEPHIPNAYCNCMIQVLYFLEPVRCLVQNHLCQKEFCLGCEL
GLLFHMLDLSRGDPCQGSNFLRAFRTIPEASALGLILADSDEATGKVNLGRLIQSWNRFI
LTQLHQETQEQEGPRAYRGAGSSSFGSSGDSVIGQLFSCEMENCSMCRCGKETVRVSSTL
LFTLSYPESTEKPVKDYEFAQILKRSICLEQNTQAWCENCEKYQPTVQTRNIRCLPDVLV
INCEVNSSKEADFWKTQAEYAFQRAMMKRGGFEITKGKEICLGEWKELGNPDTGHSYPSV
EELKNIWIPHAIKMRLTKSKELDVCNWSETDELSPTDDPESVYIYDLMATVVHILDSRTG
GSLVGHIKVGETYHQRKEGVTHQQWYLFNDFLIEPVDKCEAVQFDMSWKVPAILYYARRN
LNAKYNLVIKNPIEASVLLAEASLARKQRKCHATFIPLMLSEMPQAGDLVXLDAEFVTLN
EEEAELRSDGTKSTIKPSQMSVARITCVRGQGPNEGVPFIDDYISTQEQVVDYLTQYSGI
KPGDLDAKISSKHLTTLKSTYLKLRFLIDVGVKFVGHGLQKDFRVINLMVPKDQVIDTVY
LFHIPRKRMISLRFLAWYFL
NT seq
3121 nt
NT seq
+upstream
nt +downstream
nt
tttgacctgcacgaagaaatgctgtgggttgggaaccatgggggccatgccacctctttc
tttggcccgacgctggagcgatactcctccttccaagtgaacagcagtgacgacatccga
cagatccagagcctggagaacggtgtccttttcctgaccaaaaccaacctgaagtacatg
tcacggggaggcctcatcatttttgactacctcatggacgagtctgaggacatgcacagt
ctcctgctgacagacagcagcacgctgctcgttggcgggctgcagaaccacgtcattgag
atagacctcaacaccgtccaggagacgcagaagtacaccgtggaggttcctggcatcacc
atcatgaggcaatcaaaccgcttctttttctgtgggcatacctcggggaaggtctccctg
cgtgatctgcgcacatttgtggtggagcacgaattcgatgcacactcgggcagcttgtct
gattttgatgtccacgggaacctgctggtgacctgcggcttctccagccgaatgaacggc
ctcgcctgcgaccgcttcctgaaggtgtacgacctgcgcatgatgcgggccaccaccccg
ctgcaggtccacatcgaccccttcttccttcgcttcatccccacctacacctcccgcctg
gccatcatctcccagacaggtcagtgccagttctgcgagcccaccggcctcgccaacccc
gctgatatcttccacgtgaacaccgttgggcccctgatcatgaccttcgacgtctcggcc
agcaagcaggcgctggccttcggcgactcggaggggtgcgtccacctctgggctgactcc
ccggaggtcaccttcaatgcctactcccgggagactgactttgccttgccgtgcattgtg
gacacactaccccacttggactggaaccaggacctcgtgccgctctcgctcatccccgtg
ccgctgaccagcgacaccctactctccgactggcccactgccaactctgccccggcaccc
cggcgagcccctccggtagaccccgagattttgcgcaccatgaaaaaagtggggttcatc
ggctacgccccgaacccaaggaccaagctccgcaatcagattccctatcggttaaaagag
acggacaatgagttcgacagcttcagccaagtccccgagtccccgatagggcgggaagag
gagccgcacctctacatggtggccaagaagtacaggaaggtcacgatcaaatactccaag
ctggggctggaagactttgatttcaagcattacaacaagacgctgtttgcaggcctggag
ccccatatccccaacgcctactgcaactgcatgatccaggtgctgtatttcttggagccg
gtccgctgcctggtccagaaccacctgtgccagaaggagttctgcctgggctgtgagctg
ggcttgctcttccacatgctggacctgtcccgaggagacccctgccagggaagcaacttt
ttgcgggctttccgcacaatcccagaggcttcggcgctggggctgatcctggctgactcg
gacgaagccacagggaaggtaaacctggggcggctgattcagagctggaaccgtttcatc
cttactcagctgcaccaggaaacccaggagcaggagggaccgcgggcgtatcggggggct
ggcagcagcagctttgggtcctcgggggactcggttatcgggcaactgttcagctgcgag
atggagaactgcagcatgtgtcgctgtggcaaggaaaccgtccgcgtgtcctccacactg
ctcttcaccctctcctaccccgagagcactgaaaagccagtcaaagattatgagtttgcc
caaattttaaagcgaagcatctgcttggagcagaacacacaagcctggtgcgagaactgt
gagaagtaccagcccacggtccagacccggaacatccgctgcctgccggacgtcctggtc
attaactgtgaggtgaacagctccaaggaggcagatttctggaagacacaggctgagtat
gcctttcagagagccatgatgaagagaggaggctttgagatcaccaaaggaaaagaaatc
tgtcttggagagtggaaggagctggggaaccccgacacggggcattcgtatccttccgtg
gaggaactgaagaacatttggatcccccatgccatcaagatgaggctgaccaagagcaag
gagctagacgtctgcaactggagcgagaccgatgagctgagcccaactgatgaccccgag
tcggtgtatatctacgatctgatggccactgtcgtccacatcctggattcccgcacgggg
ggtagcctggtggggcacatcaaagtgggagagacctaccaccaaaggaaggagggagtc
acacaccagcagtggtacctcttcaacgacttcctcatcgagcccgtggataagtgtgag
gcagtgcagtttgacatgagctggaaggtgccagctatcctgtactatgcccggaggaac
ctcaacgccaagtacaacctcgtcatcaagaaccccattgaagccagcgtgttgctggcg
gaggcctccctggctcgcaagcagcgcaagtgccacgccaccttcatccccctcatgttg
agcgagatgccgcaggcgggcgacctggtgtgactggatgctgagtttgtcacgctgaac
gaggaggaggctgagctgcgcagcgacgggaccaaatccaccatcaagcccagccagatg
tcagtggccaggatcacgtgcgtgcgtgggcagggccctaacgagggtgtccccttcatt
gacgactatatctccacccaagagcaggtggtggattacctgacccagtactcggggatc
aagccgggagacctggatgccaagatctcctccaagcacctcaccactctcaaatccacc
tacctgaagctgcgcttcctcatcgatgtgggagtcaagtttgtgggccacgggctgcag
aaggacttccgtgtcatcaacctgatggtgcccaaggaccaggtgattgacaccgtctac
ctgttccacatcccgaggaagaggatgatttccctgcgcttcctcgcctggtacttcctg
g
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