Cariama cristata (Red-legged seriema): 104162080
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Entry
104162080 CDS
T08341
Symbol
RFC1
Name
(RefSeq) LOW QUALITY PROTEIN: replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
ccri
Cariama cristata (Red-legged seriema)
Pathway
ccri03030
DNA replication
ccri03410
Base excision repair
ccri03420
Nucleotide excision repair
ccri03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
104162080 (RFC1)
03410 Base excision repair
104162080 (RFC1)
03420 Nucleotide excision repair
104162080 (RFC1)
03430 Mismatch repair
104162080 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccri03032
]
104162080 (RFC1)
03400 DNA repair and recombination proteins [BR:
ccri03400
]
104162080 (RFC1)
DNA replication proteins [BR:
ccri03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
104162080 (RFC1)
DNA repair and recombination proteins [BR:
ccri03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
104162080 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
Rad17
AAA_14
AAA_22
BRCT_2
AAA_5
AAA_30
RuvB_N
AAA_16
AAA_18
AAA_17
RNA_helicase
AAA_33
AAA_7
nSTAND3
NTPase_1
AAA_19
Motif
Other DBs
NCBI-GeneID:
104162080
NCBI-ProteinID:
XP_009699030
LinkDB
All DBs
Position
Unknown
AA seq
1165 aa
AA seq
DB search
MAATPGGSDTNQDIRKFFGVVPPGKRQERETVKRSEKVKNGEGPSSGKKREKETKVNNSP
SEDDSKQKRTKKKRRIIYDSDSEEEVQSVKKSKKPSEKKAATSKLGKVLKQDPVVYISET
DEDDDFVNKRISLKPKENGTSAIGCPGTATVKKEDVKPRAKSKPLSPVKQTPTSALDYFG
TSSVQRSEKKLVASKRKELSQSRDSTRGDEAIARQLQLEEDSELERQLHEDEEFAKTLAM
LDETPQKKKARKDSGGEETLLSSKNSLNVTERYKQSERVKATNLTGEAKNYTAKQQTKSE
HSRGSPQSSDGKVGRQLMDKTLPLKPSSKLVSLKQKEEIAEKERDAQSSVSKEKXXXXXX
XXXXKEGKTTPKKEKISPKKTESGSPEDSEKKRINYQAYRSFLNREGPKALGSKEIPQGA
ENCLEGLTFVITGVLECIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDCGQSKCEKAS
TLGTKVIDEDGLFDIIRTMPGKKSKYELAAETEAKKAESRPKKTPQKGEKRNFSPFKREA
DNKKTKSTPEKGDTVKSAKKETTGVRKLMDFKWQSVEKKEAPKPKGNLISEVNEDGTERL
LWVDKYKPVSLKAIIGQQGEQSCANKLLRWLRNWQKNASEDGQAKTNKTGGKDDGTGFKA
ALLSGPPGVGKTTTASLVCKELGYSYVELNASDTRSKNSLKEVVAESLNNTSIKDFCSGT
SSSVSGKHVLIMDEVDGMAGNEDRGGIQELIGLIRHTKIPIICMCNDRNHPKIRSLVHYC
FDLRFQRPRLEQIKGAMMSIAFKEGLKIPPPAMQEIILAANQDIRQVLHNLNMWCAKDKS
LTYDEAKTDASRAKKDIRLGPFDVVRKVFATGEEASRMSLIDKSDLFFHDYSLAPLFVQE
NYVHVKPAAAGGNLKKHLVLLSRAADSICDGDIVDRQIRSKQNWSLLPTQAIYASVLPGE
LMRGHMSQFPVFPSWLGKLSSTGKHDRIIQELAMHMSLRTQTCKRTVNMEYLSYLRDALV
QPLKEFGADGVQEAITFMDSYCLMKEDIENIMEISTWGGKPSPFSKLDPKVKAAFTRAYN
KEAHLTPYSLNFVKTSKRQSGSAVTLQLNEDFNVEEIQSDEDEQDTVESDAMIKQKKAKS
SKLPKREKNEETTKKEGKRKEKTRH
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atggctgctacccccggaggtagtgataccaaccaggatatccgcaaattctttggcgtt
gtacctcctggaaagcgacaagaacgtgagaccgtaaaaaggagtgaaaaagttaaaaat
ggtgaaggaccctcaagtgggaagaagagggaaaaggaaactaaggtgaataattcaccc
agtgaagatgattccaaacaaaagcggacaaagaagaaaagaagaataatctacgactca
gattcagaagaggaggtgcagtcagtgaaaaagtccaagaagccatctgagaaaaaagca
gctacttcaaaacttggtaaagttctaaagcaggatcctgttgtctatatttcagagaca
gatgaagatgatgactttgtcaataaaagaatttccctgaaaccaaaggagaatgggacg
tcagcaattggttgtccaggaaccgctacagtgaaaaaggaagatgtaaaaccacgagct
aaaagcaaaccattatctccggtgaaacagactcccacctcggctcttgattactttggg
acaagtagtgtccaacgatcagaaaagaagctggtagcaagtaaaaggaaagaactgtca
caaagcagagacagcacacgaggtgatgaggccattgctaggcaactgcagcttgaagaa
gattcagagctggagagacagctgcatgaagatgaagaatttgctaaaactttggccatg
ttggatgaaacaccacagaagaaaaaggctcggaaagattcaggaggagaggaaacacta
ttgagcagcaagaacagtcttaatgtgacagaaagatataagcagtcggaaagagtgaaa
gcaacaaacttgacaggtgaagcaaagaattacactgcaaagcagcaaactaaatctgaa
cattcaagaggatccccacaatcatctgatggtaaagtaggaagacagttgatggataag
accttgcctttgaaacctagctctaagcttgtatctctgaaacaaaaagaagagattgct
gaaaaggaaagagatgctcaaagttcagtatcaaaagaaaaannnnnnnnnnnnnnnnnn
nnnnnnnnnnntaaagaggggaagacaacaccaaagaaggagaaaatttctcccaagaag
actgagtctggaagccctgaggactctgaaaagaagcgaatcaattatcaagcctaccga
agcttcctgaatcgtgagggcccaaaagcactgggttccaaagagatacctcagggagct
gaaaactgcttggaaggcctgacattcgtaattacaggcgttctggagtgcattgaaaga
gatgaggccaagtctctgattgaacgttacggtggaaaagtaactggcaatgtcagcaaa
aagacaaactatctggttatggggcgagactgtggccaatctaaatgtgaaaaggcatca
actttagggacaaaagttattgatgaggatggcctgtttgatattattcgaactatgcca
ggcaaaaagtccaaatatgagctggcggctgaaacagaggcgaagaaagcggagtcgaga
cctaaaaagacaccacagaaaggtgaaaaaaggaattttagtccattcaaaagggaagct
gataataaaaaaaccaagtctactcctgaaaaaggagatacagtcaaatctgccaagaaa
gaaaccactggtgttcgaaagcttatggactttaaatggcagagtgttgagaagaaagaa
gccccaaaacctaagggaaacttaatttctgaggttaatgaagatggaacagagagattg
ctatgggtagataaatataaacccgtgtctcttaaggcaataattggacagcagggtgag
caaagctgtgccaataaactgctccgatggctcagaaattggcagaagaatgcctcggaa
gatggacaagcaaagaccaataaaactgggggcaaagatgatggtactggttttaaagca
gcattactctctggtccacctggagttggtaaaactactacagcttctttggtttgtaag
gaactggggtatagctatgtggagctgaatgccagtgacactcgcagtaagaacagtcta
aaggaagtagttgctgagtcacttaacaacaccagcatcaaagacttctgttctggcaca
tcctcatcagttagcgggaaacatgtattgatcatggatgaagtggatggtatggcaggc
aatgaagacagaggagggattcaggagttgattggtttgattagacacacaaagataccc
atcatctgtatgtgtaatgatcgcaaccatcctaaaatacgttccttggtccactactgt
tttgatctgcgttttcagagacctcgtctagaacagattaagggtgctatgatgtctatt
gcatttaaagaaggcttaaaaattccaccacctgctatgcaagagataatcctggcagca
aatcaggacatcagacaggttttacataatcttaatatgtggtgtgcaaaggataaatca
ttgacttacgatgaggctaaaacggatgccagcagagccaaaaaggatatcagactgggc
ccttttgatgttgtccggaaggtttttgctactggagaggaggcttctcgtatgtctctt
atagacaaatcggatcttttcttccatgattattccttagcacctctctttgtccaagag
aactatgtacatgtgaaaccggctgctgctggaggaaatctgaaaaagcacttggtgctt
ttgagtagagcagctgacagtatatgtgatggtgatatagtggacagacagattcgtagc
aagcaaaactggagtcttcttccaacacaggctatttatgcaagtgttctcccaggagag
ctgatgagaggtcacatgtcccagtttcctgtctttcccagctggcttgggaagctttca
tccacaggcaaacacgatcgtatcattcaagaactggcgatgcacatgagtctcagaacg
cagacatgcaagaggacagtaaatatggagtatctgtcgtatttgcgggatgcgctcgtc
cagcccttgaaagaatttggcgcggatggtgtacaagaagctataacattcatggactct
tactgcttgatgaaagaagatattgaaaatatcatggaaataagcacatggggaggcaaa
cccagtcctttttcaaagctggatcccaaggtcaaagcagcttttacacgtgcctacaac
aaagaggcccatctgactccctattcacttaattttgtaaagacatctaaaaggcagtca
ggatctgcggtgaccttacaactgaatgaagactttaatgtggaagagatccaatctgat
gaggatgagcaggatactgttgaaagtgatgcaatgattaagcaaaaaaaggcaaagtct
tccaagctgccaaaaagagagaaaaatgaagaaacaacaaaaaaagaagggaaaagaaaa
gagaaaacaagacattaa
DBGET
integrated database retrieval system
