Cariama cristata (Red-legged seriema): 104162106
Help
Entry
104162106 CDS
T08341
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ccri
Cariama cristata (Red-legged seriema)
Pathway
ccri03013
Nucleocytoplasmic transport
ccri03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccri00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104162106
03015 mRNA surveillance pathway
104162106
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccri03019
]
104162106
Enzymes [BR:
ccri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104162106
5.6.2.5 RNA 5'-3' helicase
104162106
Messenger RNA biogenesis [BR:
ccri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104162106
mRNA cycle factors
Common to processing body (P body) and stress granule
104162106
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
UPF1_1B_dom
AAA_11
AAA_30
AAA_19
ResIII
NPHP3_N
Helicase_RecD
nSTAND3
DEAD
AAA_16
SLFN-g3_helicase
ATPase
SRP54
UvrD-helicase
AAA_22
AAA_25
AAA
AAA_5
Motif
Other DBs
NCBI-GeneID:
104162106
NCBI-ProteinID:
XP_009699058
LinkDB
All DBs
Position
Unknown
AA seq
564 aa
AA seq
DB search
MRKARCVKVADAAPSVVELHGSGSSWIVSGQRVNGPDGILQNGAVDDNVAKTSQLLAELN
FEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAK
CKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINW
DSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPG
VDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAY
FTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVE
VTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFT
AQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSN
IAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDET
GELSSADEKRYRALKRTAERELLM
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgagaaaggctcggtgtgtaaaagttgctgatgcagcaccaagtgttgtagaacttcat
ggttctggcagttcgtggattgtcagtggacagagagttaatggacctgatggcattcta
cagaatggagctgtagatgataatgtggctaaaaccagccagcttctggcagagttgaat
tttgaagaagatgaagaagatacctattacacaaaggatcttcctgtgcatgcttgcagt
tactgtggtatccatgaccctgcttgcgtggtttactgtaacaccagcaaaaagtggttc
tgtaacgggcgtggaaatacatctggcagccacattgttaatcatcttgtgagagcgaag
tgtaaagaggtgactctccacaaagatggacctctaggagagactgtcttggaatgttat
aactgtggatgtcgtaatgtgtttctccttggctttattccagctaaggcagactctgtg
gttgttttgctgtgcaggcagccatgtgccagtcagagcagtttaaaggatattaattgg
gacagttcacagtggcagcctcttatacaagatcgttgtttcctttcgtggttggtaaag
attccatctgaacaggaacaattgagagcacgtcagattacagctcaacagattaacaaa
ctggaagaactttggaaggaaaatccatctgcaacccttgaggacttagaaaaacctggt
gttgatgaagaaccacagcatgtcctgcttagatatgaagatgcttatcaataccaaaat
atatttggtcctctagtcaagcttgaggcagactatgacaagaaactcaaggagtctcag
acccaagataacatcacagtcagatgggacctgggcttgaacaagaaaagaattgcttat
ttcactttgccaaagactgattcagacatgcgtcttatgcaaggagatgagatctgcttg
aggtataagggagacctggcccctttgtggaaaggaattggtcatgttatcaaagttcct
gataattatggtgatgagatagccattgagctgaggagcagcgttggagcgcctgtggaa
gttactcataacttccaagtggattttgtatggaagtctacttcatttgacagaatgcag
agtgctttaaaaacatttgctgtggatgagacctcagtgtctgggtacatctatcacaaa
ctgttaggtcatgaggtagaagatgtaattattaaatgccagttgccaaagcgctttaca
gcacaaggacttcctgatctcaaccattctcaggtttatgctgtgaagactgtcctgcag
cgtcctctgagccttattcagggtccccctggtactggaaaaacagtgacatcagccaca
atcgtctatcatctggctagacagggcaatgggcctgtgttagtctgtgctccgagtaat
atagctgtagatcagttgactgagaagatccatcaaactggactgaaagtggttcgtctg
tgtgctaaaagtcgtgaggcaattgactctcctgtatccttcttggcattgcataaccag
atcagaaacatggatagcatgccagagcttcagaaactgcagcagcttaaagatgaaact
ggagaactgtcgtctgctgatgagaaacgttaccgtgcactgaaacgaacagcagagcgt
gaattacttatg
DBGET
integrated database retrieval system
