Cariama cristata (Red-legged seriema): 104162214
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Entry
104162214 CDS
T08341
Symbol
CPSF3
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
ccri
Cariama cristata (Red-legged seriema)
Pathway
ccri03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccri00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104162214 (CPSF3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccri03021
]
104162214 (CPSF3)
03019 Messenger RNA biogenesis [BR:
ccri03019
]
104162214 (CPSF3)
Transcription machinery [BR:
ccri03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104162214 (CPSF3)
Messenger RNA biogenesis [BR:
ccri03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
104162214 (CPSF3)
U7-dependent histone pre-mRNA processing factors
104162214 (CPSF3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
DUF1611
Motif
Other DBs
NCBI-GeneID:
104162214
NCBI-ProteinID:
XP_009699191
LinkDB
All DBs
Position
Unknown
AA seq
675 aa
AA seq
DB search
MTLISFCRGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLI
SHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLE
ESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM
AAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQEL
LLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHIS
NLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMS
EPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKA
ALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADKKPEQGQRISGILVKRN
FNYHILSPCDLSNYTDLAMSTVTQTQAIPYTGPFNLLCYQLQKLTGDVEEIEIQQKPSLK
VFKNITVIQEPGMVVLEWVANPANDMYADTVTTVILEVQSNPKIQKAAVHKISKKVDMDV
YRKRMEIMLQDMFGEDCVSSKDGSVLCVTVDGKTANFSLDTRTVECEPGSEDDESLREMV
ELAAQRLYDALSPVY
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgactttgatatccttttgcagaggtgctggccaagaagtaggaaggtcatgcattatt
ctggagtttaaaggaagaaaaataatgcttgattgcggaatccatcctggactggaagga
atggatgctcttccttacattgatttgatagatcctgctgagattgatctccttctcatt
agtcatttccatttagatcactgtggggctttaccatggtttttgcagaaaacaagtttt
aaaggaaggacgtttatgactcacgccacaaaagctatttacagatggcttctttcagac
tatgtcaaagtcagtaatatatcagcggatgacatgctatatacagaaacagaccttgaa
gaaagcatggacaagatcgagaccatcaacttccatgaagtgaaagaggtggcaggaatc
aaattctggtgttaccatgcaggccacgttctgggagcagccatgtttatgattgaaata
gctggtgtgaagcttttatatacaggtgatttctcaagacaggaagacagacatctgatg
gcagctgagattcccaatattaaacccgatattcttataattgaatccacttatggtact
catattcatgaaaaaagggaagagcgagaggcaagattctgtaataccgttcatgacatt
gtaaatagaggaggtagaggtcttattcctgtgtttgccctgggtcgagctcaagaacta
cttttaattttagatgaatactggcagaatcatcctgaactccatgatatccctatatac
tatgcctcctctttggcaaagaaatgtatggcagtttatcaaacgtatgtcaatgccatg
aatgacaaaatccgcaagcaaattaacatcaacaatccatttgttttcaagcatattagt
aatctgaagagtatggatcattttgatgatattggcccaagtgttgtgatggcttctcca
ggtatgatgcagagtggcttatccagagagttgttcgagagctggtgcacagataagaga
aatggagtaattatagcagggtactgtgttgaaggaacgcttgctaagcacatcatgtct
gaacctgaagagatcacaactatgtcagggcaaaaactcccactgaagatgtctgtggat
tacatttctttctctgctcacacagattatcaacagactagtgaatttatccgggccctg
aagcctccacatgtgatcttagttcacggtgagcagaatgaaatggccagattgaaagca
gcattgatacgggaatatgaggataatgatgaagttcatatagaagttcataatcctagg
aataccgaagctgtgacactaaacttcagaggagaaaaacttgccaaggtgatgggatct
ttagcagataagaaaccagagcaagggcagagaatttctggaatcctagttaaaagaaat
tttaactatcacatcctttctccatgtgacctctccaattatacagacttggcgatgagc
actgtaacacagacacaagccattccatatacgggcccttttaatctgctttgttaccag
ctacaaaaacttaccggtgatgtggaagaaatagaaatccaacaaaaaccgtccctaaag
gttttcaaaaacattactgtgatccaggaaccaggcatggtagtccttgagtgggtggca
aatcctgctaatgatatgtatgcagacactgtgacaacagtgatactggaagttcaatca
aatcctaaaatacagaaagctgcagtacataaaatttccaaaaaagtagatatggatgtt
tataggaagagaatggagatcatgcttcaggatatgtttggagaagactgtgtgagttca
aaagatggctctgtcctgtgcgtcacggttgatggaaagactgcaaacttttcactggac
actcggacagtggagtgtgagccaggaagcgaagatgatgaatcccttcgtgaaatggtg
gaactggctgcacagaggctttatgatgccctcagtccagtatactga
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