Cariama cristata (Red-legged seriema): 104162473
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Entry
104162473 CDS
T08341
Symbol
PABPC1L
Name
(RefSeq) LOW QUALITY PROTEIN: polyadenylate-binding protein 1-like
KO
K13126
polyadenylate-binding protein
Organism
ccri
Cariama cristata (Red-legged seriema)
Pathway
ccri03015
mRNA surveillance pathway
ccri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccri00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104162473 (PABPC1L)
09123 Folding, sorting and degradation
03018 RNA degradation
104162473 (PABPC1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccri03019
]
104162473 (PABPC1L)
03041 Spliceosome [BR:
ccri03041
]
104162473 (PABPC1L)
Messenger RNA biogenesis [BR:
ccri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
104162473 (PABPC1L)
mRNA cycle factors
Stress granule specific factors
104162473 (PABPC1L)
Spliceosome [BR:
ccri03041
]
Complex C
Other components
Complex C specific factors
104162473 (PABPC1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_occluded
RBD_DEAH11
DUF6262
Motif
Other DBs
NCBI-GeneID:
104162473
NCBI-ProteinID:
XP_009699505
LinkDB
All DBs
Position
Unknown
AA seq
611 aa
AA seq
DB search
MNASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQ
QPVDAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFS
AFGNILSCKVVCDENGSRGYGFVHFETHEAATRAIETMNGMLLNDRKVFVGHFKSRKERE
AEFGARAMEFTNVYIKNFGDDMDDDRLRGIFSKFGKTLSVKVMMDNAGRSKGFGFVNFEK
HEEAQKAVADMNGKEINGRMVYVGXAQKRLERQSELKRKFEQIKQERVSRYQGVNLYVKN
LDDGIDDERLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVST
KPLYVALAQRKEERKAILTNQYMQRLATMRALPGPLLGSFQPPPGYFLPPIPQPQTRAAF
YSPSPVVPVRPATRWSAQPSRPPRESPSTPIVRAAAPPRRLLSNISTMRQASTQVPRVPP
QAQRVANIGTQTVSARVPSSPTLPRGAPQYKYSSAVRNVQPMGDVGEPAVHVQGQEPLTA
CERLYPLVHAMHPSLAGKITGMLLEIDNSELLLLLESPDSLRSKIEEAVAVLQAHQAAEP
SQKSSTAVFLQ
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgaacgctagcggccctggctatccgttagcctctctctacgtgggagacctccaccca
gacgtgaccgaagccatgctctacgagaagttctcacctgctgggcccatcatgtccatc
cgagtctgtcgggatgttgctacacgccgatcgctgggctatgcctacataaatttccag
cagcccgtggatgctgagcgagccctggacaccatgaactttgaagtgatcaaaggccgt
cccatccgcattatgtggtcccagcgggaccccgggctcaggaagtcgggggttggaaac
gtcttcatcaagaacctggatgactccatcgataacaaagccttgtacgacacattctcc
gccttcggaaacattttgtcgtgcaaggtggtttgtgatgaaaacggatcccgtggctat
ggctttgttcactttgagactcacgaggcagcgactcgggccatcgagaccatgaacggg
atgttgctcaacgaccggaaggtgtttgttggccatttcaaatcccgcaaagagcgtgag
gctgagtttggggctcgagcgatggagttcaccaacgtctacattaaaaactttggggat
gacatggatgacgacagactgcggggaatattctccaagtttggaaagacgctaagtgtc
aaagtcatgatggacaacgctggccgctcaaagggctttgggtttgtcaactttgagaag
cacgaagaagcccagaaggcggtggccgacatgaacgggaaggagatcaatgggcggatg
gtgtatgtgggctgagcccagaagcggctggaacgccagagcgagctgaagcggaaattt
gagcagatcaagcaggagcgagtgagcaggtaccagggggtcaacctgtacgtgaagaac
ctggatgatgggatagatgacgagaggctgaggaaggagttctctccctacggcaccatc
accagtgccaaggtgatgacagagggtggccacagcaaagggtttggatttgtatgtttt
tcctccccagaagaggctaccaaggccgtgacggagatgaacgggcggatcgtcagcact
aagcctctctacgtcgcgctcgctcaaaggaaagaggagcggaaagcaatcctcaccaac
cagtacatgcagagattagccaccatgagggccctgcctggccctctcctgggctccttc
cagccccccccggggtacttcctaccccccattccccagccgcagaccagagctgccttc
tacagccccagcccagttgtcccagtccgtcctgccactcgctggagtgcacagccctcc
cggcctccccgtgagtcgccctccacccccatcgtgagggctgccgcgccgccccggcgc
ctgctgtccaacatcagcaccatgagacaggcctccacccaggtgccccgtgtgcccccc
caggcccagagagtggccaacatcgggacacagacggtcagcgctcgggtgccctcgtcg
cccaccctgccgcggggtgccccgcagtacaagtactcctcggctgtcaggaatgtccag
ccgatgggggacgtgggagaacctgctgtccatgtccaggggcaggagccgctgaccgca
tgtgaacgtctctaccctctggtccatgccatgcatccctcgctggccggcaagatcact
gggatgctgctggagatagacaactccgagctgctgctgctcctggagtcccccgactcc
ctgcgctccaagatcgaggaagcggtcgctgttctccaagcgcaccaggctgccgagccg
tcgcagaagagcagcacggcggtgttcctgcagtga
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