Cariama cristata (Red-legged seriema): 104162927
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Entry
104162927 CDS
T08341
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1
KO
K12828
splicing factor 3B subunit 1
Organism
ccri
Cariama cristata (Red-legged seriema)
Pathway
ccri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104162927 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccri03041
]
104162927 (SF3B1)
03036 Chromosome and associated proteins [BR:
ccri03036
]
104162927 (SF3B1)
Spliceosome [BR:
ccri03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
104162927 (SF3B1)
Complex B
104162927 (SF3B1)
Complex C
U2 SnRNP specific factors
104162927 (SF3B1)
Chromosome and associated proteins [BR:
ccri03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
104162927 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
HEAT
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
UME
Adaptin_N
CEP104-like_TOG
UNC45-central
DUF2298
T4_baseplate
Motif
Other DBs
NCBI-GeneID:
104162927
NCBI-ProteinID:
XP_009700075
UniProt:
A0A091M587
LinkDB
All DBs
Position
Unknown
AA seq
791 aa
AA seq
DB search
AALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHK
ILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFA
VVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHG
LVDEQQKVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYL
IPLMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPP
FFKHFWQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIE
KIMGNLGAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQIC
GTVLWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSI
LGALKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAR
EWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTT
VAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLL
EDALMDRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGA
LEGLRVAIGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDEKN
TYIRYELDYIL
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
gctgcattgcgacaaattactgataaagctcgggaatttggagcagggccgttgtttaat
cagattctgcctctgctgatgtcgccaacacttgaagatcaggagcgtcacttgcttgtc
aaagtcatcgacagaattctgtacaaactggatgacttggtccgaccatatgtacacaag
atccttgttgtcattgaaccactgctgattgatgaagactactatgctagagtggaaggc
agagaaattatttcaaacttggcgaaggctgctggtttggcaacaatgatctccacaatg
cgacctgatattgataatatggatgaatatgtccgaaatacaacagctcgagcctttgct
gtcgttgcctctgctttgggcattccttctctgttacccttcttgaaagctgtctgtaaa
agcaaaaaatcctggcaggctaggcatacaggcatcaagattgtacagcagattgctatt
cttatgggttgtgctatcctgcctcatctcaggagcttggttgaaattattgaacatggt
ctggtggacgagcagcagaaagttcgcaccatcagtgctttggctattgctgctttggct
gaggcagctactccctatggtattgagtcatttgattctgttctgaagcctttatggaag
ggtatacgtcaacacagaggaaagggtttggctgcctttttgaaggctattggttacctg
attccactcatggatgctgagtatgcaaactattataccagagaagtcatgctaatcctt
atcagagagttccagtctcctgatgaagagatgaaaaaaattgtgttgaaggtggtaaag
cagtgttgtggtacagatggtgttgaagcaaactacattaaaacagaaatcttgccacct
tttttcaaacacttctggcaacacagaatggcattggacagaaggaattacagacagttg
gttgatacaactgtggagctggcaaataaagttggagcagcagaaattatttctagaatt
gtggatgatctgaaagatgaggctgagcagtacagaaaaatggtcatggaaacaattgag
aagataatgggaaatctgggggcagcggacattgatcataaactggaagaacaacttatt
gatggtatcttgtacgcctttcaggaacagactacagaggattctgtaatgctgaatggt
tttggcacagtggttaatgctctaggcaaaagagttaaaccctacttgccacagatctgt
ggtacagttttgtggcgtttgaacaacaaatcggctaaagttaggcagcaggctgctgac
ctgatctctcgtactgcagttgtcatgaagacttgtcaagaggaaaaactgatgggacac
ttgggtgttgtgttgtatgagtacctgggtgaagaatatcctgaagtactgggcagcata
cttggagcacttaaggctattgtgaatgttataggtatgcacaagatgacaccaccaatc
aaagatctgctgccacggcttacacctattttgaagaacagacatgagaaagtacaggaa
aattgtattgatcttgtggggcgcattgcagaccgaggtgcagagtatgtttctgcaaga
gaatggatgaggatctgctttgaactgcttgaattattaaaagctcacaagaaagctatc
cgaagagccacagtgaacacttttggttatattgctaaagctattggacctcatgatgta
ttggctacactgctaaataacttgaaagtacaggaaaggcagaacagagtatgtactaca
gtagcaattgctattgtagctgaaacatgctcacctttcacagtgctgcctgcactcatg
aatgaatacagagttccagaactgaatgtccagaatggtgtgttaaaatctctttctttc
ctgtttgaatacattggagagatgggaaaagattacatttatgctgttacacctttgctt
gaagatgctttaatggacagggatcttgtacacagacaaacagccagtgccgtggtgcaa
catatgtctcttggtgtttatgggtttggctgtgaagattctcttaatcatttgttaaat
tacgtatggcctaatgtgtttgaaacctctcctcatgtcattcaggcagttatgggggct
ctggagggcctcagagttgctattggtccctgcagaatgttgcagtattgtttacagggt
ttgtttcaccctgccagaaaagtcagagatgtttattggaagatttataattcaatctac
atcgggtcacaggatgctctgatagcacattatccaagaatctataatgatgaaaagaac
acctatattcgttacgaacttgattacatcttataa
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