Cariama cristata (Red-legged seriema): 104163154
Help
Entry
104163154 CDS
T08341
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
ccri
Cariama cristata (Red-legged seriema)
Pathway
ccri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104163154 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccri03019
]
104163154 (PARN)
Enzymes [BR:
ccri01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
104163154 (PARN)
Messenger RNA biogenesis [BR:
ccri03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104163154 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
T6PP_C
NCBP3
RRM_1
HRM
Motif
Other DBs
NCBI-GeneID:
104163154
NCBI-ProteinID:
XP_009700360
LinkDB
All DBs
Position
Unknown
AA seq
577 aa
AA seq
DB search
MDFLLFQFGLCTFKYDHTEERYIMKSFNFYIFPKPFNRSSPDVKFVCQSSSIDFLANQGF
DFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGSLSYISPNATKCPVTIPEDQKKFI
EKVVEQIEDLLKNEENESLELEPCTGFQRKLIYQTLSWKYPKGIHVETLESDKKERYIVI
SKVNEEERKRREQQKQAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTIHQFY
CPLPDDLSEFKEVTSCVFPRLLDTKLMASTQPFKEIINNTSLAELEKRLKEVPFSPPKVE
SAEGFPSYDTASEQLHEAGYDAYITGLCFISMANFLGSFLSPPKNHVSARSKLIEPFYNK
LFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTSA
FVSLSQPEQVQIAVNTSRYAESYRIQTYAEYVEKKHEEKQAKRKCTEDSWKEMERKRLKT
QCTSYVSQSRYYCVNSFTGTSTVGKRSMSPIQEETGSDDMEEEEGQDPEYDQTDSCAESL
PDGKKRAKKLKKMKTEQVPAGSLTTSSTGIFEVPETW
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atggattttttgctctttcagtttggcctttgcacttttaaatatgatcacacagaggaa
aggtatataatgaagtcatttaatttctatatttttccaaaaccctttaacagaagttca
ccagatgtcaagtttgtctgtcagagttcaagtatagattttttagcaaaccaaggattt
gattttaataaagttttccgcaacggaattccatatttaaatcaggaagaagaaagacag
ctaagggaacagtatgatgaaaaacgttctcaggccaatggtgcaggatctttgtcatac
atttctcctaatgccacaaagtgtcctgtaacaattcctgaagatcagaaaaaattcatt
gagaaagtagtggaacagatagaagacttattaaagaatgaagaaaatgaaagtttggaa
ctggagccatgtacaggatttcagaggaaattaatttatcagaccttgagctggaagtac
ccaaaaggtatccatgttgaaactctggagtcagataagaaggagagatatatcgttatt
agtaaggtaaatgaagaagaacgaaaaagaagagaacagcagaaacaagcaaaagaacag
gaagaactgaatgatgcagtaggattttccagagtcattcatgccattgctaattctggc
aagcttgttattgggcacaatatgctactggatgttatgcataccatacaccagttctat
tgtcccctacctgatgacctcagtgagttcaaggaagtgacatcatgtgtctttccccgg
ctgttggatactaaactgatggcaagtacacaaccttttaaggagatcattaataataca
tcccttgcagaactggaaaagcgtttaaaagaggttccgttcagccctcctaaagttgaa
agcgcagaagggtttccaagttatgatacagcttccgaacagcttcatgaagcaggatat
gatgcttacattactggactgtgcttcatctccatggctaatttcctaggttcgttcctc
agtcctccgaaaaaccatgtgtctgctagatcaaagctcattgaacctttttataacaag
ctatttcttatgagagtaatggacataccatatctcaatttggaaggaccagacttacag
ccaaaacgagatcatgttcttcatgttacgtttcccaaagagtggaagactagtgacctt
taccagcttttcagtgcctttggtaacattcaggtttcgtggattgatgatacatcagcg
tttgtttcattgagccagcctgaacaagtacaaatagctgtaaacaccagcaggtatgct
gaaagttataggatccagacatatgcagaatatgttgagaaaaaacatgaagaaaaacag
gcaaagagaaaatgtacagaagatagttggaaggagatggagagaaagcggttaaaaact
cagtgcacatcttacgtttcccagagtcgatactactgtgttaacagttttacaggtacc
agtacagtgggaaagagaagcatgagtcctattcaggaagaaactggttctgatgatatg
gaagaggaagaaggccaagatccagaatatgatcagacagactcttgtgcagagtccctt
ccagatggtaagaagagagccaaaaagttaaaaaagatgaagacagaacaagttccagca
ggaagcctcacaactagttccactggaatttttgaagtccctgaaacatggtag
DBGET
integrated database retrieval system
