Cariama cristata (Red-legged seriema): 104163341 Help Entry 104163341         CDS       T08341                                  Symbol COL27A1 Name (RefSeq) collagen alpha-1(XXVII) chain   KO K19721   collagen type V/XI/XXIV/XXVII, alpha Organism ccri  Cariama cristata (Red-legged seriema) Pathway ccri04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:ccri00001]  09140 Cellular Processes   09142 Cell motility    04820 Cytoskeleton in muscle cells     104163341 (COL27A1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:ccri00536]     104163341 (COL27A1) Glycosaminoglycan binding proteins [BR:ccri00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    104163341 (COL27A1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Collagen COLFI Laminin_G_2 GH131_N Laminin_G_3 Motif Other DBs NCBI-GeneID:  104163341 NCBI-ProteinID:  XP_009700626 LinkDB All DBs Position Unknown AA seq 1728 aa AA seqDB search GFCFLWTVLCFTWFLGFTQGNSEDVDVLQRLGLSGKRPSSGWSSSRTVPQGVIPFKSGVI FTQRARVEAPASTILPAGSSTDLLLVLSLCSHRINNAFLFAVKSKKKKLQLGVQFVPGKI IVYVGHKRSVYFDYNVHDGQWHNMAIDIRGQTVTLFTSCGKRRVHADLHFKKDEALDPRG SFLFGKINQHSVQFEGAICQFDIYPSAKAAHHYCKYLKKQCRQADTYRPNLPPLIPLLPR DPSASPSTPQHTEPSLQGLKNLTTAAPPLEFGRVTAPLKSRGSAATTITLVSSPPSLPRL TTKATKVTVAPSPVPSSTETQPPTRSLPRGTVTTLRASRPTPSTRMEKTSLPAAKKTPPT SQSPATASRKESEQETKKKINQKPTVEPSEAASTVKPMRRMTDNTTSNVHFVTLKQTPLN PSNGPVPKKHVPSPTRKADPSNVPLVYTKPPPGSARPVSRARTQAFNLTTPAATDGYQIF DPLGPTPFPFLLGYPGMKGERGPQGPPGLPGLPGPPGKRGSRGPPGPHGNPGSPGPPGSK GQKGDPGLSPGKARNGQKGDVGLPGLTGFPGPPGRKGYKGYPGPPGHPGDQGERGPDGSP GAKGYPGRQGLPGPIGEAGPKGSRGYIGLPGLFGLPGADGERGIPGVPGKRGKMGRPGFP GDFGERGPPGIDGNPIKLGAPGPPGVLGLIGDMGSVGPIGYPGPKGLKGLMGNPGEHGLK GDKGDQGRAGVPGDIGFQGDKGSQGLPGVPGARGKAGPLGKIGDKGPVGFPGPPGPEGFP GDIGPPGENGPEGLKGKPGARGLPGPRGLPGQEGDEGPLGPPGVPGPEGRSGRKGFPGRP GPDGPKGEPGNGGRPGKVGEQGLMGFIGPVGEPGIVGEKGDRGSVGPPGPPGVKGSMGHP GTPGGVGFPGIPGPTGPAGVRGAPGIRGMKGRRGARGPDGPVGEPGPRGVKGRPGEPGKL GPDGLQGKMGENGETGARGFPGIQGPSGPPGAKGAPGDPGPQGPQGPPGPLGEMGHKGPP GSMGQPGLAGEPGMKGDPGQLGVSGEQGLVGQRGESGLEGDSGPPGPDGVKGDKGEQGLE GEKGEKGNEGLKGKEGPPGYPGITGVRGPEGKPGKQGEKGKPGQKGSKGYQGQLGETGSP GKEGPKGNQGPKGSRGTLGPMGAPGRMGAQGEPGLKGYQGHAGPPGPIGPPGPKGEKGEQ GDDGKVEGPQGPPGDRGPVGDRGDRGEPGDPGYPGQEGLDGERGKPGQQGLPGDPGPPGQ PGAKGSKGDVGQKGKQGARGHAGSRGSPGILGLPGPRGVVGRQGQEGAPGVDGVPGKDGM PGVLGEQGDDGEEGMTGMSGKRGNPGIPGLPGAQGPPGFKGERGLPGQTGQTGKRGSSGG TGLPGSPGDLGPKGQPGDFGEAGFPGIAGMFGPKGPPGDLGFKGIQGPRGPPGLMGKEGI IGPLGIQGPTGSPGPKGDKGSRGEMGLQGPRGPPGPRGHPGPPGPPGIPASFQQDGFGAA FRTLIDSNTALKTEGYQHPDLLMLDHGGEIFKTLHYLSNLIQSIKRPLGTKENPARICRD LMNCEQKMNDGTYWIDPNLGCSSDTIQVICNFTNGGQTCLSPITVSKLDFDIGRVQMNFL RLLSSEVVQHITIHCLNTSVWREGSSEKPSEKAVRFRAWNGQMFEADGQLRPEVAADDCK IKDGRWHRTLFSFRTQDPQQLPIVNIYNLPPSEPGKQYHLEVGPVCFL NT seq 5188 nt NT seq  +upstreamnt  +downstreamnt gggattctgctttctctggactgtattatgttttacctggttcctgggattcacacaggg aaattctgaagatgtggatgttcttcaaagactgggcctgtcagggaaaaggccatcgag cggatggtcctcatcacgtacagttcctcaaggagttattcctttcaaatcaggggtcat cttcactcagcgagcacgtgttgaagcaccagccagcaccatcctccccgcaggctccag cactgacctgctcctagtgctgagcctctgctcccaccgcatcaacaatgcttttctctt tgctgtcaagagcaaaaagaaaaaactgcagctgggggtccagtttgtgcctggaaagat catagtatatgtgggccacaagcgctctgtatattttgattacaatgtccacgatggcca gtggcacaatatggccatcgatatccgtggccagacagtcactttatttacttcttgtgg gaagcgcagagtacatgcggatttgcattttaaaaaggacgaggcattggatccacgtgg atctttcctctttgggaagataaaccagcactccgtgcagtttgaaggagccatctgcca gtttgatatttatccttctgccaaggcagctcatcattactgtaaatacctgaaaaaaca gtgcaggcaagcagatacctaccggccaaacctgccccccctcatccctctcctgcccag ggatcccagtgcctccccgagtaccccacagcatacggagccctcgctgcagggtctgaa aaacctgaccactgctgccccacccttggagtttggcagggtcaccgcacccctcaagtc tcggggttcagctgcaacaaccatcacattggtatcatccccaccatccctgccacggct gacaaccaaagccacgaaggtcacagtggccccatctcctgttccatcgagtactgaaac acagccacccacccgttcactccctcgggggacggtgacgaccctcagggcgtctcggcc cactcccagcacgcgcatggagaaaacttcccttcccgctgccaaaaagaccccaccgac aagccagagccctgccacggccagcaggaaggagtctgagcaagagaccaaaaagaagat taaccaaaaacccaccgttgagccctctgaagcagccagtactgtaaagccaatgaggag gatgactgataacacaaccagcaatgttcactttgtcaccctaaagcaaaccccgctgaa cccaagcaatgggcccgttccaaagaagcacgtgccgtcccccaccaggaaagcagaccc tagtaacgtccctctggtgtacaccaaaccacccccggggtctgcccgtcctgtctccag ggccaggacgcaggctttcaacctcacaactccagctgcgactgatggctatcaaatctt tgaccccctcggacccactccttttccatttttactgggatatccaggaatgaaaggaga gagaggacctcagggtccaccaggtcttccgggcttaccaggaccacctggcaagagagg ttcccgaggtcccccaggtccccacggaaaccctggctcacctggccccccaggctcaaa aggtcagaaaggggatcctgggctctcgcctggaaaagctcgcaacggacaaaagggaga cgtgggcttacctggtttgactgggttccctggaccacctggtagaaagggatataaagg ttaccctggaccaccaggtcaccctggagaccagggcgaacgaggaccagatggaagtcc aggtgccaaaggttatcctggcaggcagggtttacctggccccataggggaagctggtcc aaaaggcagtcggggatatattggtctcccaggattgtttgggctaccaggggctgatgg agaaagagggatccctggagttcctgggaagaggggcaagatgggtaggccgggttttcc tggtgatttcggagaacgaggacctccaggcatcgatgggaacccaataaaattgggagc cccaggtcctcctggagtccttggactcattggtgacatgggctctgttggaccgatagg ctatccaggaccaaaaggtttaaaggggctgatgggaaaccctggagaacatggactgaa aggtgataagggtgatcaggggagagcaggtgttccaggagatatcggcttccaaggaga caagggcagccagggtttgcctggggtccctggggcacgaggaaaagcaggccccctggg aaaaatcggcgacaaaggtccagtggggtttccaggaccacctggccctgagggcttccc aggtgatattggtcctccaggagaaaatggtcctgaaggcctgaagggaaagccaggagc acgaggtttacctgggccaagaggactgcctggacaagagggagatgaaggacccttagg accaccaggagtccctggtccagagggtcgatctggccggaaaggatttccgggaagacc tggtcccgatggtccaaagggtgagcccggcaatggtggccgaccagggaaagttggtga gcagggtttaatgggtttcattggtcccgtaggggagcctggaatagtgggagaaaaggg cgaccgtggctcagtgggacccccaggccctccaggagtcaaggggtcgatggggcaccc tgggacaccaggaggagtgggttttcctgggatccctggaccaacaggtccggcaggagt ccgtggtgcgccagggataagagggatgaaaggccgcaggggtgccagagggcctgatgg accagtaggcgagccagggccacgaggtgtcaagggccgaccaggggagccaggcaagct ggggccagatgggctgcaggggaagatgggtgagaatggggagacaggagcacgtggctt cccgggtatccaaggaccttctggacctccaggagcaaaaggggctccaggcgacccggg tccacaagggccacaggggccacctgggcctttgggagaaatggggcataagggaccgcc tggctcaatgggacaacctggccttgcaggtgaacctggcatgaagggtgatcctggcca gctgggagtctctggagagcaaggcctcgttggccaaagaggagaatcagggctggaagg ggacagcgggccacctggaccggacggtgtcaagggagacaaaggagagcaaggcctgga aggagagaaaggagaaaaaggcaacgaaggactgaagggaaaagaagggcctcctggata tcccggcatcacaggtgtccgaggaccagaagggaaaccaggaaaacaaggggaaaaggg caagcctggccagaagggcagcaagggctaccaggggcagctcggcgagacaggatctcc agggaaggaggggccgaaggggaaccaaggccctaaaggatcccgaggtaccctgggacc tatgggtgctccaggaaggatgggtgctcaaggggaacctggcttaaagggttaccaggg acatgcaggaccaccagggccaattggaccaccagggccaaagggagaaaagggagaaca aggtgatgacgggaaggtagaaggcccacagggaccacctggagacagaggccccgttgg tgacagaggtgatcgaggggaacctggagaccctggttatcccggtcaagaagggcttga tggagaaagaggaaaacctggacagcaaggcttacctggggatcctggaccaccaggcca gccaggagcaaagggatccaaaggtgatgtgggtcaaaaaggaaagcaaggagcacgggg ccatgcagggagcagaggctcaccgggcatccttgggctaccaggtcctcgaggagtggt gggaaggcagggtcaagagggtgcccctggagtggacggagtgcctgggaaggacggcat gcctggggtgctgggagaacagggtgatgatggggaagaaggtatgacagggatgtcagg caaaagagggaaccctggcatacccggactccctggggcacagggaccaccaggattcaa gggtgaaagaggattgcctggacagactggccaaacagggaagcgaggatcatcaggagg aacgggccttccagggagccccggtgatctgggacccaaaggacagccgggagactttgg cgaggcaggatttccaggcattgcgggcatgtttgggccaaagggccccccaggagacct cggtttcaaaggcattcagggaccacgtgggccgcctggtctcatgggaaaagaaggaat tattggtccgcttggcattcagggtcccacaggaagcccagggcccaagggagacaaagg cagccgcggagaaatgggtctacaaggtccaaggggtcctccaggcccacgaggacaccc tggccctccgggaccgccaggaattccagcctcatttcaacaagatggctttggggcagc tttccggacactaatcgactctaacaccgcgctcaagacagagggttaccaacatccaga ccttctcatgctggaccatggaggggagatctttaagactctacactacctcagcaacct cattcagagcatcaaaagacccctgggaaccaaggaaaaccctgcacgcatctgtcgaga cctcatgaactgtgaacagaaaatgaacgatggtacctactggattgacccaaaccttgg ctgttcctcggacaccatacaggtcatctgtaacttcaccaatggtgggcagacgtgtct cagccccatcaccgtctccaagctggattttgacatcggtagagtccagatgaacttcct ccgcctcctgagctcagaggtagtgcagcacatcaccatccactgcctgaacacctccgt ctggcgggaaggctcatccgagaaaccttcggaaaaagccgtgcgcttcagggcctggaa cggacagatgtttgaggcagacgggcagctcaggccagaagtggcagcagatgattgcaa gatcaaggatggacgctggcatcggactctcttttcatttcggacgcaggaccctcagca gctgccaattgtcaacatctacaaccttcccccatccgagccaggaaagcaatatcacct cgaggttggccccgtgtgcttcctttga

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