Cariama cristata (Red-legged seriema): 104164279
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Entry
104164279 CDS
T08341
Symbol
PDCD11
Name
(RefSeq) LOW QUALITY PROTEIN: protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
ccri
Cariama cristata (Red-legged seriema)
Brite
KEGG Orthology (KO) [BR:
ccri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ccri03009
]
104164279 (PDCD11)
Ribosome biogenesis [BR:
ccri03009
]
Eukaryotic type
90S particles
Other 90S particles
104164279 (PDCD11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
S1_RRP5
S1
OB_RRP5_4th
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
Spt6_S1
OB_RRP5
Suf
HAT_PRP39_C
TPR_14
HAT_Syf1_CNRKL1_C
TPR_19
TPR_15
ARM_TT21_5th
ARM_TT21
TPR_12
Motif
Other DBs
NCBI-GeneID:
104164279
NCBI-ProteinID:
XP_009701863
LinkDB
All DBs
Position
Unknown
AA seq
1843 aa
AA seq
DB search
MASMEENFPRGGIQKKPTERKTPNPKLERDNLFDVHHEEKSQKRKKSQRDQGKQKKFKAD
KVATAKDNVVNIEPLTIEALCEGMLLLGCIKEVSDYELVINLPNGLSGFVPVTQISDAYS
KMLSKQVAQGELLEDLNSLSDMYSPGTLVRCIVTSVEKSADGRRSIKLSIDPKKVNKGLN
ASALALGMLLSGFVSSVEDHGYLIDIGVSGTHAFLPRQKAQRYIKAVKRGPDLKIGQNLN
CVIVEVKNEGRVVRLSVDRSEVAASLATEQQNWTLSNLLPGLVVKARVQKVAPLGIKLSF
LSSFTGIVDFMHMDPQKSVNYSPDQVVKACILSIHPTSKVVRLTLRQAFLHPGGSPNQLP
YDRMGAVVEESSVKAFYKQFGAIFELDDGTLAFARLKHLSKNRKSFKPGAFKTGCKHKCR
IIDYSLMDEMCIVSLKYQIIEARFLQYQDIHTGDVVQGKVFALKPIGMQVKVTDGIKGLV
PSMHLADVILKQPEKKYNIGDEVRCRVLECNPAGRKLILTLKKSLVQSKLPVLSNYEDAK
PGLITHGFVVCAREFGCIVKFYNDVKGLVPKNELSSEPVSYPDKVFHEGQVVKTMVLKCE
LXQERLLLSFRLSSEPALDNKKEYTPKKIQEVKYQIGEMVDVKILKKKDNGLAVSILEDE
GNVIASIPTVHLSDFVATCKLLWHCLQEGDVLPRVMCLSDKGEHIILSRKSSVISAVQEE
QVVRSFSEIQPGMLLTGYVRNVMPFGVFVEFPFGVTGLAPKVSMSDKFVTDTKDHFVVGQ
TVIAKVMSTDEEKQRVLLNLKVSECSSGDSAAESFALLNQYFKEMKEIRNLLRRRGEPSM
ARGLCELVPGKELQLVVQDVKEDGSALFSGSCVTVLTLPATHYHLGDKNIVPGEKTKALV
LHVDALTSKVYISLREELLKQRAKQRLTENSQHSAIVQHIAEEFAIVSLLETGQLAAIPI
ASHFNDTFRFDSEKLKVGQTISVTLKVVKVNDHGVLLAVQGPAKKNAFVRVRNESETALE
EMLAAVKHSLSXXXLSLGDIVTGTVKSVKPTHVTVSIDDKLTGSIHASRILDEVPIGSFP
TCSLKVGQKVTARVIGGRDVNTHRYLPITHPHFTRSIPELSIRPSEIEGKVTAMLNLKED
SALRKLGLYSVGQIVTCFVKKYNILKNWLEVEVTPDIRGRVPHLLLSLNTKVLKHPEKSF
KNGQAISATVTGTDVTETNLCLSLTGIQSLEQGTITVGMVTKMTPHVGLTIALPGGKTGK
VSIFHLNDTYTENPLGDFKVGKIVRCYILSNENGKIQLSLRQSRLNPKSNSKVEDVEITC
VKDVKKGQLVRGYVKSVTPSGVFFGLSASLLGRILFQNVSPYFVQKHSLYEKYLPEGKLL
TAKVLGVNGKEKHIELSLLPEDTGMSSILPESLGLPLYDAEEEKREANNREKREELKLKT
KRRRGNSESEQETKPKKRKICPADENDSGIEVYYREEEDNDQEEEAAKKKSKIRKPGEAP
RLQVSVGFTWDEDMNAMDIPVLNQKEESSESEEEEDPQSKLKKQTKKQKELEKQKKEKEL
CKIEAALMDPSRQPQSADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKT
ICFREEQEKLNVWVALLNLENMYGTEETLMKVFERAVQYNEPLKVFQHLCDIYANSEKYK
QAEELYHTMLKRFRQEKSVWLKYASFLLKQGQTEATHRLLERALKALSTKEHVDVISRFA
QLEFRFGDPEHAKALFESTLSSYPKRTDIWSIYMDIMIKHGSQKEVRDIFERVIHLNLAP
KKMKFFFKRYLDYEKKFGTTESVLAVKRAALEYVETKSSLADT
NT seq
5532 nt
NT seq
+upstream
nt +downstream
nt
atggcatccatggaggaaaactttcctcgagggggcatccagaaaaaacccacagagaga
aaaacacccaacccaaagttagagcgggacaatttgtttgatgttcaccatgaagaaaaa
tcccagaaaagaaaaaagagccaaagggatcaaggaaagcagaaaaagttcaaggcagac
aaagtagccactgctaaagacaatgttgtgaatattgaaccactcacaattgaggcgctc
tgtgaggggatgctgctccttggttgtataaaagaggtcagtgactatgagctagtcatt
aacttgcccaatggactttcaggatttgtgccggttacacagatcagcgatgcctacagc
aaaatgctgagcaagcaggtggcccaaggagaactcctggaggacttgaattccctctca
gacatgtattctccagggacactggtgaggtgcattgtgaccagtgttgagaaaagtgct
gatggacgtcggagtatcaaattatcgatcgaccccaagaaggtcaataagggtctgaac
gcttcagcactagcattgggcatgctgctctctggctttgtgtctagtgtggaggaccac
ggctacctcattgatattggagtcagtgggactcatgctttcctgcctcgtcagaaagcc
caacgttacatcaaagcagtcaagagagggcctgacttgaaaataggccagaacctgaac
tgtgtcattgtggaagtaaagaatgagggaagagttgtccgtttgtccgttgatcgatca
gaggttgctgcatcgcttgcaacagaacaacagaactggacactttctaatttattgcca
gggctggtggtgaaagctcgagtgcagaaggtggccccccttgggatcaaactgagcttt
ctgtcttccttcactggtattgtggatttcatgcacatggacccacagaaatccgtgaac
tattctccagatcaagtggtgaaagcttgcatcctctctatccaccctacctccaaggtg
gtgcggcttactctacggcaggccttcctccaccctggaggatccccaaaccagcttccc
tatgatcgcatgggggcagtggtagaggagtcatcagtgaaagctttctacaagcagttt
ggtgccatctttgagcttgatgatggcactcttgcatttgcacggttaaaacatctttca
aaaaacagaaaatcctttaaacctggagcatttaagacaggatgcaaacataaatgtcgg
atcattgactacagcctgatggatgagatgtgtattgtatctctgaagtatcagattatt
gaagcacgatttctacaataccaagatatccacacaggggatgtggtgcagggcaaagtg
tttgctctgaaacccattgggatgcaggtgaaagtgactgatgggattaaagggcttgta
ccgtccatgcacctcgctgatgtgatcctgaagcagcctgaaaagaagtacaacatagga
gatgaagtcaggtgtcgggtgctagagtgcaatcctgcaggaagaaagctgatccttact
ctaaagaaaagtcttgtccaatcaaagcttccagtcctctccaattatgaggatgcaaaa
ccaggtctgatcacacatggctttgtggtctgtgcacgggagtttggctgcattgtgaag
ttctacaatgatgtcaaaggactggtacccaagaatgagctgagctcagaacccgtatct
tatccagataaagtcttccatgaaggccaggttgttaaaacaatggtcttaaaatgtgag
ctanngcaggaaagactcttgttgtccttcaggttatcaagtgagcctgctctggacaac
aaaaaggaatatactccaaagaagatacaggaagtgaaatatcaaataggagagatggtt
gatgtgaaaatcttgaagaagaaggataatgggctagctgtttctatcttagaagatgaa
ggcaatgtgatagcctcaattcccacagtgcatctctctgactttgttgctacctgcaag
ctcctgtggcattgtcttcaagagggagatgtcctgcccagagttatgtgcctaagtgac
aagggagagcatatcatcttgagcagaaagtcttcagtgatttctgctgtacaggaggag
caagtggtgagaagtttctctgaaattcagcctgggatgctgttgactggttacgtgagg
aatgtgatgccctttggagtgtttgttgagttcccttttggtgtgacaggactggcaccc
aaagtgagcatgagtgacaagtttgtgacagacaccaaagaccactttgtggtgggacag
actgtgattgcgaaggtgatgagcactgatgaggagaagcagcgtgtgctcctcaatctg
aaggtgtcagagtgcagctcaggcgattctgctgcagagagctttgccctgctgaatcaa
tatttcaaggagatgaaagaaatcaggaacttgttgaggagaagaggggagcccagcatg
gcccgaggcctttgtgagttggtgcctgggaaggagctgcaactggtcgtgcaggatgtg
aaggaggatggctcagcactgttcagtggcagttgtgtcacggttctcactttaccagcc
actcactaccatttaggagacaaaaatattgttcctggtgagaaaaccaaggcattggtt
cttcatgtggatgccctcacatccaaggtgtatatttctcttcgggaagaactgttaaaa
caaagagccaagcaacggctcacagagaactcccagcactctgccatcgtgcagcacata
gcagaagagtttgccatcgtgtctttgttggaaacaggccagctagcagctatccccata
gcgtctcacttcaatgacacgttccgctttgactcagaaaaactgaaggtgggacaaaca
atctccgtaaccttgaaagtagtgaaggtgaatgaccacggagtcttgttagcagtacaa
ggcccagcaaagaagaatgcttttgtaagggtccggaacgaatctgagacagcattagaa
gagatgcttgctgctgtgaaacactctctttcnnnnnnnnnnctttccctgggggatatt
gttactggtactgttaaatctgtcaaaccaacccatgtcacagtttctattgatgacaag
ctgacaggttcaatccatgcatcccggattctggatgaagtgcccataggctcttttcca
acatgtagtctgaaagttggacagaaggtgactgctcgagtcattggaggcagagatgtg
aatactcacaggtacctgcccatcacccatccgcacttcacacggtccattccagagctc
agcattcgaccaagcgaaatagaagggaaagtcacagcaatgctgaaccttaaagaagac
agtgccctcaggaaacttggactctacagtgttggacagatagtcacctgttttgtgaaa
aagtataacatcctcaaaaattggctggaggtagaagtcacccctgacattcgaggaaga
gttcctcatctactgctgtctctgaacaccaaggtcttaaaacatccagaaaagagcttc
aaaaatggccaggcaatatcagctacagtgactggaacagatgtcaccgaaacaaacctc
tgcttgtcactcacaggaattcagtcactggagcagggcaccatcactgtaggcatggta
acaaagatgactccacacgttggtttgaccattgcgctgccaggtgggaagactggcaaa
gtcagtatctttcacctgaatgatacttacacggagaatcctctgggtgactttaaagtt
ggcaagattgtccggtgttacatcctttccaatgagaatggcaaaattcagttatctctc
cgacaatcccggctaaacccgaagagcaatagcaaagtggaggatgttgaaataacatgt
gttaaggatgttaaaaaaggccagctagtgagaggctatgtaaaatcagtcactccatca
ggtgtattctttggcttgtctgcttctcttctgggccgaatcctcttccagaatgtttcc
ccttactttgtacagaaacactccttatatgaaaagtacctgcctgaaggaaaactgctc
actgccaaggtgcttggtgtaaatggaaaagaaaaacatattgagctctctctcctgcct
gaggacaccgggatgtcaagcatcttgcctgaatccctaggcctaccactatatgatgca
gaggaagagaagagagaggcaaataatagggaaaagagagaagagcttaagctgaagaca
aaacggagaagaggaaactctgaaagtgagcaggagacaaagccaaaaaaaaggaagatc
tgcccagcagatgaaaatgacagtggaattgaagtgtattaccgagaggaggaagataat
gaccaggaggaagaggcagctaaaaagaaatctaagataaggaaacctggtgaagctccc
aggctgcaggtttctgtgggcttcacctgggatgaggacatgaatgcaatggacatacct
gtgctgaatcagaaggaagaaagctcagagagtgaggaggaggaggatccacagtcaaag
ctgaagaaacaaacaaagaagcagaaggagctagagaagcagaagaaggagaaggaactc
tgcaaaatagaggcagctctgatggaccccagtcgacaaccccagtcagcagatgacttt
gaccgcctggtgctgagcagtcccaacagctccatcctctggctacagtacatggctttc
cacctccaggctaccgagattgagaaagccagagctgtggcagagagagcgcttaaaaca
atctgcttcagggaagaacaagagaagctgaatgtctgggtagctctgctgaacttggag
aacatgtatggtactgaggagacactgatgaaggtctttgagagagctgttcaatacaat
gaacctctgaaagtcttccagcatctgtgtgacatttatgccaattctgagaagtacaag
caagcagaagaattgtaccacacaatgctgaagcgtttccgtcaggaaaaatctgtgtgg
ctgaaatatgcatctttcctcctgaagcaaggccagactgaggcgacacacaggcttttg
gagcgtgctctcaaggctttgtccaccaaagaacatgtggatgtcatttcaaggtttgca
cagctggagttccgttttggggacccagaacatgccaaggccctctttgagagcaccctc
agcagctatcccaagcggacagacatctggtccatctacatggacatcatgatcaaacat
ggcagccagaaggaagtacgggacatctttgagagggtcatacacctgaacttggcgcca
aagaagatgaaattcttctttaaacgctacctggattatgaaaagaaatttggtacaaca
gaaagtgtcctggctgttaaaagagcagcacttgagtacgtggagaccaagagttccctt
gcggacacctaa
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integrated database retrieval system
