Cariama cristata (Red-legged seriema): 104164408
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Entry
104164408 CDS
T08341
Symbol
PABPC4
Name
(RefSeq) polyadenylate-binding protein 4
KO
K13126
polyadenylate-binding protein
Organism
ccri
Cariama cristata (Red-legged seriema)
Pathway
ccri03015
mRNA surveillance pathway
ccri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccri00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104164408 (PABPC4)
09123 Folding, sorting and degradation
03018 RNA degradation
104164408 (PABPC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccri03019
]
104164408 (PABPC4)
03041 Spliceosome [BR:
ccri03041
]
104164408 (PABPC4)
Messenger RNA biogenesis [BR:
ccri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
104164408 (PABPC4)
mRNA cycle factors
Stress granule specific factors
104164408 (PABPC4)
Spliceosome [BR:
ccri03041
]
Complex C
Other components
Complex C specific factors
104164408 (PABPC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_7
RRM_occluded
RRM_10
RBD_RDR6
RRM_3
POP1_C
Motif
Other DBs
NCBI-GeneID:
104164408
NCBI-ProteinID:
XP_009702029
LinkDB
All DBs
Position
Unknown
AA seq
630 aa
AA seq
DB search
MNTAASSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEK
HEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERLSRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRIAGMRALPANTIINQFQPAAGGYFMPAVPQAQSRP
TYYAPNQMTQMRPNPRWQQGGRPQGFQGMPNAMRQSGPRPALRHLAPAGNAPASRGLPAA
AQRVGVGTAGQNLAPRPPVAAPAPRAVPPYKYASSVRSPHPAVQPLQAPQPAVHVQGQEP
LTASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLR
SKVEEAVAVLQAHQAKKEAAQKVGVVAATS
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgaacacggctgccagcagttacccgatggcgtcgctgtacgtgggtgacctgcacccc
gatgtcaccgaggccatgctctatgagaagttcagccccgctgggcccgttctctccatt
cgggtctgcagggatatgatcacccgccggtccctcgggtatgcctacgtcaacttccag
cagccagcagatgctgagcgtgctctagataccatgaattttgatgtgatcaaaggaaaa
cccattcgcatcatgtggtctcagagggacccctccttgaggaagtcaggggttgggaat
gtcttcattaagaacctggacaaatccattgataacaaggcactttatgacacattctca
gcgtttgggaatattttgtcctgcaaggtggtgtgtgatgagaatggctctaagggctac
gcatttgtgcactttgagacccaggatgctgcagatagagccatcgagaagatgaacggc
atgctgctaaacgaccgcaaagtgtttgttgggagattcaagtctcgtaaagagcgggag
gctgagttgggagcgaaggcgaaggaattcaccaatgtctatattaaaaactttggggat
gacatggatgatgaaagactaaaggagctcttcagcaaatacggtaaaactctgagtgtt
aaagtgatgacagaccccactggaaaatccaagggctttggctttgtaagctttgaaaag
catgaagatgctaacaaggcagtagaagaaatgaatggaaaggatatcaatgggaaaatg
gtatttgtaggccgagcacagaagaaggttgagcgccaggcagagctgaaacggaagttt
gaacagctaaaacaagagagactcagccggtaccagggtgttaacctatacattaaaaac
ctagatgacactatagatgatgaaaaactgaggaaggagttctcaccttttgggtcaata
acgagtgccaaggtcatgctggaagatggacggagcaaagggtttggctttgtctgcttt
tcctctccagaggaagctacgaaagctgtgacagagatgaatgggcgaattgtgggctca
aagccgttgtatgttgcacttgcacaaaggaaagaagagcgaaaggcccatctgactaat
cagtacatgcagcgcattgctgggatgagagccttgcctgccaacacaatcattaatcag
ttccagcctgctgctgggggatatttcatgcctgctgtgccccaggcacagagcagaccc
acttactatgcacccaatcaaatgacgcagatgagacccaacccacgctggcagcaagga
ggaagacctcaaggcttccagggaatgccaaatgccatgcgccagtctggaccacggcca
gcactgcgccatctggcccctgccggcaatgctccggcctctcgtggcctccctgctgct
gcccagcgagttggtgttggcactgcagggcagaatttagctcctcgtccgcctgtagct
gcccctgctcccagagcagtacctccttataaatatgcctcaagtgtccgcagcccacac
ccagctgtacagcctttgcaggcacctcagcctgcagtacacgtgcagggacaggaaccg
ctaacggcctccatgctggctgctgcccctccccaggagcagaaacagatgctgggagaa
cgtttgttccctctgattcaagctatgcaccccagccttgcggggaagatcacaggaatg
ctgctagagattgacaactcggagcttctgcacatgctagagtctccagagtccctccgg
tcaaaggtggaggaggccgttgccgtgttgcaggctcaccaagccaagaaagaagctgcc
cagaaggtgggcgtggttgctgctacctcttaa
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