Cariama cristata (Red-legged seriema): 104165479
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Entry
104165479 CDS
T08341
Symbol
YTHDC2
Name
(RefSeq) probable ATP-dependent RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
ccri
Cariama cristata (Red-legged seriema)
Brite
KEGG Orthology (KO) [BR:
ccri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccri03041
]
104165479 (YTHDC2)
Enzymes [BR:
ccri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104165479 (YTHDC2)
Spliceosome [BR:
ccri03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
104165479 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
Helicase_C
HA2_C
R3H
DEAD
AAA_19
nSTAND3
Ank_2
AAA_22
HA2_N
ATPase
Ank_4
PhoH
AAA_23
Ank
AAA_16
AAA_7
SRP54
PBP-Tp47_a
ResIII
AAA_29
AAA_30
Motif
Other DBs
NCBI-GeneID:
104165479
NCBI-ProteinID:
XP_009703424
LinkDB
All DBs
Position
Unknown
AA seq
1367 aa
AA seq
DB search
MEFPSSFTSTERAFVHRLCQSLGLISKSQGKGANRYLTVRKKIGSELTRAVMTCCLSPST
KCAVQSLIQRYPVTNKERTKLLPKMERGSACAIESENREVNKTSGYLNNGIPQVPVKRGE
SEFDSFRQSLPVFEKQEEIVKIIKDNKVVLIVGETGSGKTTQIPQFLLDDCYKNGTRCRI
FCTQPRRLAAVAVAERVAAERREKIGQTVGYQIRLESRVSPKTLLTFCTNGILLRTLMAG
DSTLSTVTHLIVDEVHERDRFSDFLLIKLRDVLQNQTNLKLIISSAALDANLFIRYFGSC
PVIHIQGSPYEVKEMFLEDILRNTGYTNEEMVKYKKEKEREEKQQSTLTEWCAAQENNSK
LESQRQRSVLSTTEEYNLLDDGGDTVFNQLTEKDANCLEPWVIKEMDSCLSDIWLHKDTD
SFAQVFHLILTENVSVDYRHSETSVTALMIASGRGFLSQVEQLISMGASIHCRSSNGWMA
VDWAKRFGQTEVVDLLESYSASVEFGNLDESSLVQTSGSDLSAEDRELLKAYHHSFDDEK
VDLDLIMHLLYNICHNCEAGAILIFLPGYDEIVSLRDRILFDDKRFADNAHRYQVFMLHS
NMQTLDQKKVLKRPPSGVRKIILSTNIAETSITVNDVVFVIDSGKMKEKSFDALSCVTML
KMVWISKASAIQRKGRAGRCQPGVCFRLFSRLRFQNMLEFQTPELLRMPLQELCLYTKLL
APINCPIVDFLMKAPDPPPALIVRNAVQMLKTIDAMDPWEDLSELGYHLTDLPLEPHLGK
MVLCAVVLKCLDPILTIACTLAYRDPFVLPAVASQKRAAMLCRKRFTAGTFSDHMALLRA
FQAWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGHLRASGFIRARGGADIRDVNT
NSENWAVVKAALVAGMYPNLVHVDRENLVLTGPKEKKVRFHPTSVLSQPQYKKIPPANGQ
AAAIQALPTDWLIYDEMTRAHRIANIRCCSVVTPVTVILFCGPARLPSNALQAPSSFRGD
GVSNDGSDSEMEDETTTNLALLKLDEWLHLKLDPEAAGLLFELRQKWHSLFLRRMQSPSK
PWSQVDETTIRAITAILSAEEQSAGLQQPSGIGQRPRPMTSEELPLASAWRSTNSRKSSA
ETEFSDDSSNAEKVLMKSVPPTLHQPKKYQEKNSLHSKQTSDDRSDQSSVKSTDSNSYPS
ACASPSSPISGKGSRSPSPRPNMPVRYFIMKSNNLQNIDISQQKGIWSTTPSNERKLNRA
FWGSSMVYLIFSVQGSGRFQGFARMASEIGCEKSQDWGSAGFGGVFKVEWIRKESIPFQF
AHHLSNPWNDNKKVQISRDSQELEPQVGEQLLQLWDRIPLAGRNSTD
NT seq
4104 nt
NT seq
+upstream
nt +downstream
nt
atggaatttccttcttctttcactagtactgaaagagcatttgttcaccgcctctgtcag
tcccttggactgatatctaaaagtcaaggaaaaggagcgaaccgatacctgactgtaagg
aagaagattggatcagaactaacacgtgcagtaatgacttgttgcttgtctcctagtacg
aaatgtgctgttcagagtttaattcagagatatcctgtcacaaataaagaacgaacaaaa
cttctgccaaagatggagcgaggaagtgcgtgtgctattgaatctgaaaacagagaagtg
aacaagacaagcggatatcttaacaacggtattccccaggttcctgtaaaaagaggggaa
tcagagtttgattccttcaggcaatcactaccagtttttgaaaaacaggaagaaattgtg
aaaataataaaggacaataaagttgttttgattgtaggagagactggatcaggaaaaact
actcaaattcctcagttccttcttgatgactgttacaaaaatggaactcgctgtcgtata
ttttgcactcaaccaagacgtttggcagctgttgctgtggctgaaagagtggcggcagaa
agaagagagaaaattggccagacagttggttatcagatccgtttagaaagcagggtttct
ccaaagacgctgttaacattttgcactaatggcatactacttcgcacactcatggcggga
gacagcactctatcaactgtgacacatcttattgtggatgaagtacatgagagggatagg
ttcagtgacttcttgttaataaaactgagagatgtgttgcaaaaccagactaatttaaaa
ctaattatttctagtgctgctctagatgcaaatctctttattagatattttggaagttgc
ccagtaatacacatacaaggaagcccttatgaagttaaagagatgtttttggaggacatt
ttacgaaacactgggtatacaaatgaagagatggtaaagtacaaaaaagagaaggagcga
gaagaaaaacagcaaagcactcttactgagtggtgtgctgctcaagaaaataatagcaaa
ctggaatctcagagacaaagatcggtcctgagtacaactgaagagtataatctgttggat
gatggtggtgacacagtatttaatcaactgactgaaaaagatgcaaactgccttgaacca
tgggtaataaaagaaatggattcttgtctttctgacatctggttacataaggatactgat
tcctttgctcaggtgttccatctcattttaactgaaaatgtcagtgttgattataggcac
agtgaaaccagcgtgactgccctaatgattgcttcagggagaggctttctgagtcaagta
gaacaactgatcagtatgggagcgagtatccactgcagatcatccaatggctggatggct
gtggactgggctaagcggtttggacagacagaagttgttgacctgttggagtcctacagt
gcctcagtggaatttggaaatctggatgaaagttccctagtccaaacaagtggtagtgac
cttagtgcagaggacagagaactgttgaaagcttatcatcacagttttgatgatgaaaaa
gtggatctggacctgattatgcacttactttataacatctgtcataattgtgaagctgga
gcaattttaatatttcttcctggatatgatgagatagttagcctgagggaccgtattctt
tttgatgacaagaggtttgctgataatgctcacagataccaagttttcatgcttcattca
aatatgcagactttggatcagaagaaggtgcttaaaaggccaccttctggcgtccgcaaa
ataattctttccactaatattgcagaaaccagcataacagtcaatgatgttgtatttgta
attgactcaggcaaaatgaaagagaagtcttttgatgccctgagttgtgttacaatgcta
aaaatggtgtggatttcaaaagccagtgctatccagagaaaaggcagggctgggcgctgt
cagcctggagtctgttttcgtctcttcagcaggctccgatttcagaatatgttggaattt
cagactccagaacttctaagaatgccacttcaggagctttgtttatacacaaaacttctg
gctccaattaattgtccaattgttgactttcttatgaaagctcctgatcctccaccggct
ttaattgtgagaaatgctgtgcaaatgcttaagacaatagatgccatggacccttgggaa
gatctcagtgaactgggttatcatctcactgatttaccattagagccacaccttggtaaa
atggtgttgtgtgctgttgttttgaagtgcctggatcctattcttactattgcttgcact
cttgcatatcgagacccttttgtcctacctgcagtggcctctcaaaagcgtgcagccatg
ctgtgtagaaaacgttttactgcaggaacatttagtgaccatatggcgcttctcagggct
ttccaggcatggcagaaggcacgcagtgatggctgggagagagccttctgtgaaaagaac
ttcctgtctcaagccactatggaaatcattataggaatgagaacacagttgcttggccat
cttagagcctcaggttttattagagccagaggaggagccgatattagagatgttaatact
aactctgaaaactgggctgtagttaaagctgccttagtggctgggatgtaccccaatcta
gtgcatgtagacagggagaacctggttttgactggaccaaaggagaagaaagtgcgattt
catcctacctctgttcttagtcaaccacagtataaaaagattcccccagcaaatgggcaa
gctgcagccattcaggcactccctacagactggcttatatatgatgaaatgacgagagct
cacaggatagcaaatatcagatgctgttctgttgtaacacctgtcactgtgatactcttc
tgtggaccagctagattaccaagtaatgctttgcaggcaccttcgtcctttcgaggggat
ggggtatctaatgatggcagtgatagtgagatggaggatgagacaactactaatttggca
ctactgaagctagatgaatggctccatctcaaactggaccctgaagctgctggtttgctg
tttgaactcagacagaagtggcatagcttatttctgcgtcgtatgcaatctccttctaaa
ccatggtctcaagttgacgaaacaactataagagcaattacagctattttaagtgctgaa
gagcagtctgcaggtttgcagcagccttcaggaattggtcagagaccaagacctatgact
tctgaagagcttcctttagcatctgcgtggaggtcaaccaacagtagaaaaagctcagca
gaaactgaattctctgatgactcttctaatgctgaaaaagttttaatgaaatctgtgcct
cccacgcttcaccagccaaagaagtaccaagaaaaaaacagtttgcattccaaacaaact
tcagatgacaggtcagatcaatcatcagtgaagtctacagacagcaatagctatcctagt
gcctgtgctagtccttcttctccaatatctggaaagggttccagatctccttcaccaaga
ccaaatatgccagttcggtactttataatgaaaagtaacaacttgcaaaacatagatatt
tctcaacagaagggtatatggtctactacgccaagtaatgaacgaaaactaaatagagcc
ttttgggggagcagcatggtttacttaatattttctgttcaagggtctggacgctttcag
ggttttgctagaatggcttcagagatagggtgtgagaaaagtcaagactggggatctgct
ggttttggaggtgtatttaaggtggagtggatccgaaaagaaagcattccttttcagttt
gcacaccatttgtccaacccttggaatgacaataagaaagtacagataagcagagatagc
caggaactggaaccacaagttggagagcagttgctacagctttgggaccgtattcctttg
gcaggaagaaactcaactgattga
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integrated database retrieval system
