Cariama cristata (Red-legged seriema): 104165528
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Entry
104165528 CDS
T08341
Symbol
XRN2
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
ccri
Cariama cristata (Red-legged seriema)
Pathway
ccri03008
Ribosome biogenesis in eukaryotes
ccri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccri00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
104165528 (XRN2)
09123 Folding, sorting and degradation
03018 RNA degradation
104165528 (XRN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccri03021
]
104165528 (XRN2)
03019 Messenger RNA biogenesis [BR:
ccri03019
]
104165528 (XRN2)
03009 Ribosome biogenesis [BR:
ccri03009
]
104165528 (XRN2)
03016 Transfer RNA biogenesis [BR:
ccri03016
]
104165528 (XRN2)
Transcription machinery [BR:
ccri03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104165528 (XRN2)
Messenger RNA biogenesis [BR:
ccri03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
104165528 (XRN2)
Ribosome biogenesis [BR:
ccri03009
]
Eukaryotic type
Pre-60S particles
RNases
104165528 (XRN2)
Transfer RNA biogenesis [BR:
ccri03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
104165528 (XRN2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
DUF8363
Motif
Other DBs
NCBI-GeneID:
104165528
NCBI-ProteinID:
XP_009703480
LinkDB
All DBs
Position
Unknown
AA seq
937 aa
AA seq
DB search
VNCVEEKAKECNGVKAPIDTSKPNPNEVEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMM
VAIFEYIDRIFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFRASKEGMEAAEEKQKIRQE
ILAKGGILPPEEVKERFDSNCITPGTEFMDNLAKCLRYYIADRLNSDPGWKNLTIILSDA
SAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLGLATHEPNFTIIREEFKPN
KPKPCGLCNQMGHEVKDCQGLPREKQGKHDQFADSLPMAEQEFIFIRLCVLREYLERELT
MASLPFTFDFERSVDDWVFMCFFVGNDFLPHLPSLEIREGAIDRLVNIYKNVVHKTGGYL
TESGFVNLQRVQMIMLAVGEVEDSIFKKRKDDDDNFKRRQKEKRKRLKRDQPSFIPGGQF
SPQALGNRSSPQAISNPRQAAFEMRMHDRQNSTTSSSPNTSLTSDGSPSLAGGIKRKAED
SDSEPEPEDNIRLWETGWKQRYYKNKFDVDASDEKFRRKVVQSYVEGLCWVLRYYYQGCA
SWNWYYPFHYAPFASDFEGIADMPSDFEKGSKPFKPLEQLMGVFPAASGNFLPPTWRKLM
TDPESSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEESRRNS
LGGDVLFVGKHHPLCDFIVEQYKTKNTEPVDIPPELCHGIQGKLTLNENAVLPDQTVESP
VPMLRDLTQNSAVSISFKDPQFADDFVFKAIVLPGAKKPAPVLKPGDWEKNNNDGRPWRP
QLDFNRDRKPVHLDQSAFRTLGHAMPRXXXXXXXXXXXMYANAIPLGTYGSPYARPLLSG
QQQIPKLLSNLRPQESWRGPTPLFQQAPQRTAGAAPLLAWNRMLQSQNQYQPSQYQGLGG
PMSYPQRPEDRMDRGRQAYGPGRPYPLPPPSGRYSWN
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
gtcaactgcgtggaggagaaggctaaagagtgcaatggcgtcaaggctccaattgataca
agcaaacctaaccctaatgaggtggagtttgataacctatatttggacatgaatggtata
attcacccttgtacacatccagaagacaagccagcacccaaaaatgaagatgaaatgatg
gttgcgatttttgagtatattgacaggatcttcaacattgtaagaccaaggcgacttctt
tacatggctatagacggagtcgctccacgtgcaaaaatgaatcaacagcggtcaagaaga
ttcagagcatcaaaggagggcatggaagctgctgaagagaagcaaaaaataagacaagaa
attctggcaaaaggtggcattcttcctccagaagaagtgaaagagagatttgacagcaac
tgtattaccccaggaactgagtttatggacaatctggctaaatgtctccgctattacatc
gctgaccgtttgaacagtgacccagggtggaaaaatttgacaattattttgtctgatgct
agtgctcctggtgaaggtgaacataaaatcatggattacattagaagacaaagagctcaa
ccaaaccatgacccaaacactcatcattgtctgtgtggggctgatgctgatctgattatg
cttggcttagctacacatgaaccaaacttcactataattagggaagagtttaaaccaaat
aaacccaagccatgtggtctttgtaaccagatgggtcatgaggttaaggattgccaaggt
ttgcccagagaaaaacaaggcaagcatgatcagtttgcagacagtcttcctatggctgaa
caagaatttatcttcatccgattatgcgttttgcgagagtacttggaaagagaactcact
atggccagtttgcctttcacttttgattttgaaagaagcgttgatgactgggtctttatg
tgcttctttgtgggaaatgactttcttcctcatctgccatctttggagatcagggaggga
gcaattgatcgcttggttaacatatataaaaatgtggtgcacaaaactggggggtacctc
acagaaagtggttttgtcaacctacagcgggtccagatgatcatgttagctgttggagaa
gttgaagatagtattttcaaaaagagaaaagatgacgatgataactttaaaagacggcaa
aaagaaaaacgaaaaagactgaagagggatcagccttcttttattcctggtggacaattt
tcccctcaagctctgggaaatcgatctagtcctcaggcaatcagtaaccctagacaagct
gcctttgagatgagaatgcatgacagacaaaattctacaacttcatcatctccaaacacc
agcctcacttctgatggcagcccatccctggcaggaggaattaagcgaaaagctgaagat
agtgacagtgaacctgagccagaggataatatcaggttatgggaaactggttggaaacag
cgctactataaaaacaaatttgatgttgatgcatctgatgagaaattccgtcgtaaagtt
gtacagtcctatgtggaagggctttgctgggttctcagatattattatcagggctgtgca
tcctggaactggtattacccttttcactatgctccgtttgcttctgactttgagggtatt
gcagacatgccttcagattttgagaaaggctcaaaaccgtttaaacctcttgaacaactt
atgggagtatttccagctgcaagcggaaattttctgccaccaacgtggaggaagctcatg
acagatccggaatcaagcataattgacttctaccctgaagattttgctattgatttaaat
gggaagaaatatgcttggcaaggtgttgcgttattgccatttgttgatgagcgacgcctt
agagctgccctggaagaagtctaccctgacctcactcctgaagaaagcagaagaaatagc
cttggtggtgatgttctctttgttggaaaacaccacccactttgtgacttcattgtagaa
cagtacaagaccaaaaatacagagccagtggatatacccccagagctgtgccatggaatc
cagggaaagcttacactgaatgaaaatgccgttcttccagatcagacagtggagtctcct
gttccaatgctgcgtgatcttacacaaaattctgcggtcagtatctctttcaaagatcca
caatttgctgacgactttgttttcaaggctatagtgttacctggtgcaaagaaacctgct
ccagttctgaagccaggagactgggaaaaaaacaacaatgatggcaggccttggagaccg
caacttgattttaaccgagacagaaaaccagttcatttggaccagtcagcatttagaact
ttgggccatgccatgccaagggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgtat
gccaatgcaatacctcttggaacttacgggagcccgtacgccaggccgcttctgagtggg
cagcagcagattcctaaattgttgtcaaatcttagaccccaggagtcttggcgaggtcct
acacccttgtttcaacaggcaccacaaagaactgctggggctgctcctcttcttgcctgg
aaccgcatgctgcaatcccaaaatcagtaccaaccaagtcagtaccaggggctgggcgga
ccaatgagttacccacagagacctgaagatcggatggacaggggaagacaggcatatggc
cccgggaggccctacccgctaccacctccctcaggaagatacagctggaattag
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