KEGG   Cariama cristata (Red-legged seriema): 104168087
Entry
104168087         CDS       T08341                                 
Symbol
SNRNP40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
ccri  Cariama cristata (Red-legged seriema)
Pathway
ccri03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ccri00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    104168087 (SNRNP40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ccri03041]
    104168087 (SNRNP40)
Spliceosome [BR:ccri03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    104168087 (SNRNP40)
 Complex C
   U5 SnRNP specific factors
    104168087 (SNRNP40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_TEP1_2nd WD40_CDC20-Fz EIF3I Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 WDR90_beta-prop_4th ANAPC4_WD40 Beta-prop_EIPR1 Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_SPT8 Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_Vps41 Beta-prop_WDR19_1st Beta-prop_WDR75_2nd eIF2A Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Beta-prop_HPS5 Cytochrom_D1 WDR54 WD40_like WD_LRWD1 Beta-prop_Nup120_160 PROPPIN
Other DBs
NCBI-GeneID: 104168087
NCBI-ProteinID: XP_009706847
UniProt: A0A091MEV8
LinkDB
Position
Unknown
AA seq 313 aa
LPQGPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGNTLASAGFDRLILLWNVYGDCDNYAT
LKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGP
QLVCTGSDDGTVKLWDIRKKAAVQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQ
NKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRIWDVRPFAPKERCVKIFQGNVHNF
EKNLLRCSWSPDGSKIAGGSADRFVYVWDTTSRRILYKLPGHAGSVNELAFHPEEPIILS
ASSDKRLYMGEIQ
NT seq 942 nt   +upstreamnt  +downstreamnt
cttccgcagggcccaccgcgctgctcctccctgcaggcccccatcatgctgctctcgggg
cacgaaggagaggtgtactgctgcaagtttcaccccaacggcaacacccttgcttctgcc
ggcttcgacaggctcatcctgctgtggaatgtctatggggactgcgataattatgccacc
ctgaagggacacagcggggcggttatggagctgcactataacacagatggcagcatgctc
ttctcagcatccacagacaaaaccgtggctgtgtgggatagtgagactggagaaagagtg
aagagactgaagggccatacctcgtttgttaactcctgttacccagcaaggcgaggaccc
cagcttgtctgtacaggcagtgatgacgggacagtgaagctatgggatatcaggaaaaaa
gctgcagtccagacatttcagaacacgtaccaggtcttggctgtaactttcaatgacaca
agtgatcagatcatatctggaggcatcgacaacgatattaaggtgtgggaccttcgtcag
aacaagctcacttacacgatgagaggacatgcagactcggtgacaggcctcagtctgagt
tcagaaggctcctacctgctctccaatgcaatggacaacacagttcgcatctgggatgtg
cgaccgtttgcccctaaagagagatgtgtaaaaattttccaggggaacgtacataatttt
gaaaagaatcttctgaggtgctcttggtccccggatgggagtaaaatcgcagggggatcg
gcagacaggtttgtctacgtgtgggacaccacatccaggcggattttgtacaagctgcca
ggccacgctggctcagtgaacgaactggctttccatccagaggaacccattatactctct
gcatccagcgacaaaagactctatatgggggagatccagtga

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