Chrysoperla carnea: 123294113
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Entry
123294113 CDS
T09255
Name
(RefSeq) hypoxia-inducible factor 1-alpha isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
ccrn
Chrysoperla carnea
Pathway
ccrn04137
Mitophagy - animal
ccrn04140
Autophagy - animal
ccrn04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ccrn00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
123294113
04137 Mitophagy - animal
123294113
04148 Efferocytosis
123294113
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccrn03000
]
123294113
Transcription factors [BR:
ccrn03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
123294113
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS
PAS_3
PAS_11
PAS_9
PAS_4
HLH
HIF-1a_CTAD
Diguanyl_cycl_sensor
PAS_2
OrgA_MxiK
Motif
Other DBs
NCBI-GeneID:
123294113
NCBI-ProteinID:
XP_044731135
LinkDB
All DBs
Position
2:complement(20642003..20743939)
Genome browser
AA seq
1065 aa
AA seq
DB search
MHNLQTTLINLPVTQVTVPQQPLLINQNDLIIQESINVVPAVIHCNNNNNSVLNTSIISE
NSLRSPLCIDDNIPFNRPIVRGRLTDGLSDLPCQRIRPWKYKNCFGYYDGETHTSCQFVN
VVDVEDFMNNEKRKEKSRDAARCRRSRETEIFSELANALPLSKEAVSQLDKASVMRLAIS
YLKIRDLVKILPKIEPPKELSEADDESVFLKALDGFMIVISDEGDIVYLSENVSEFLGIS
QVDLMGQNIYEYSHACDHDEVRSILTTKGNNEQQTVIQTRSFFLRLKCTITSKGRNVNLK
SATYKVIHFTGHILSLETEIKKPTKDEDNEQNNNKNSNNSNNNQQKCLIAIGQPIPHPSN
IEVPLDKKTFLSKHSLDMKFTYADEIMLDVLGFDPDDLVGKSVYDYHHALDNDVISSSFK
SLFSKGQCETSRYRFLAKCGGYVWVVSQATVLHDKSHKPQSVVCVHYVISGIECKEEIYS
ISQQLAVTSQKQQQIESKVDIKEIDLAKPPTTVIALEKELKEKIDIKDNIHIKTDQDSQE
KKIDYSRPRCTTQSLFVQPERPQTATSKIFAPRTSDMNKGFLMFSEEEGITILKDDPDDL
THLAPTAGDVCVPLPEFLTTEMFDDILSDTYCPLTLTDDLGSLDSSQSSNKTSSTSGISD
PFMVYRDDFDFCKSELSTSPQLLSPNLSKSPGDSLPSLCSPGNSLSEDDHISSFVTLQME
SEEENEFISKAPYISMNVGDDLPLLNMSEDLMWGALPPDDKILTQKTLNMTNTTLNSSLA
QLLCQKTSTNQRSSTTYKTHDHGGGLINMSELLLKYGGDTRDTADHWTLQENNPLIEINK
SPPEIPISNIKQTKTTSIHTDRAPKRSNANNNNQYGTMSKRCRSNHEPKEKLSSELLNQL
MSNTPTRSASQTKQKNNEWPNSRTDQPPSDSVLMNLLGNGKYSGKDSKPIDINDSSNQSM
DDDSVNNEDDNSLNNVVEDNQRLPNIAVLLGNRTSTIDNEECQKQRHELIRKNSFSLLDP
EGRTIPSLMDLSQQDYDVNAPVNNTILLQGYELLNALEYSDPMMC
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atgcacaatttacaaacaacgttaattaatttacctgtaacacaagtaacagtgcctcaa
caaccgttgttaattaatcaaaatgacttaataatacaagaatcaattaatgttgtacct
gcagtgatacattgtaataacaataacaatagtgtattaaatacatcaattatcagtgaa
aatagtttacgatcgcctttgtgtatcgatgataatataccatttaatagaccaattgta
cgtggtcgtttaactgatggtcttagcgatttaccatgccaacgtatacgaccatggaaa
tataaaaattgttttggttattatgacggtgaaacgcatacatcatgtcaatttgttaat
gtggtagatgttgaagattttatgaataatgaaaaacgcaaagaaaaatcacgggatgcc
gcaagatgccgtcgttcacgtgaaactgaaatattttccgaacttgcaaatgccttacca
ttatcaaaagaagccgtttcacagttggataaagcatctgttatgcgacttgctatatcc
tacttgaaaattcgagatttagtcaaaattttaccgaaaattgaaccgccaaaagaatta
tcagaagcagatgatgaatcagtgtttttaaaagcattagacggattcatgattgttata
tcagatgaaggagacattgtgtacctatcagaaaatgttagtgaatttctcggcatatca
caggtggatctcatgggacaaaatatatatgagtatagccatgcatgtgatcatgacgag
gttcgaagtatattaacaacaaaaggcaataacgaacaacaaactgtaatacaaacaaga
tcatttttcttacgattaaaatgtacgattacaagtaaaggacgcaatgttaatttaaaa
tctgctacatacaaggtaattcattttactggccatatactatcattagaaacagaaatt
aagaaaccaacaaaagatgaagataatgaacaaaataacaataaaaatagcaacaatagt
aacaacaatcaacaaaaatgtttgatagcaattggacaaccaatacctcatccatcaaat
attgaagtaccattagataaaaagacctttcttagtaaacacagcttagatatgaaattt
acatatgctgatgaaataatgttagacgttctcggatttgatccagatgatttggttggc
aaatctgtctacgattatcatcatgcattagataatgatgtaattagctcaagtttcaaa
agtttgttttccaaaggacaatgtgaaacatcgcgctaccgattcctggcaaaatgtggc
ggttacgtgtgggtcgtaagtcaagcaactgtcctgcatgataagtctcataaaccgcaa
agtgttgtttgtgtacattatgtgataagtggaattgaatgtaaagaagaaatatactca
atatcacagcagttagcggttacgtcacaaaaacaacaacaaattgagagtaaagttgat
attaaagagattgatttagcgaaaccaccaacaactgtaattgcattagaaaaagaactt
aaagaaaaaattgacattaaagacaatattcatattaaaactgatcaagattctcaagag
aagaaaattgattattcaagaccacgttgtacaactcaaagtttgtttgtacaaccggag
cgtccacaaacagctacatcaaaaatatttgcacctagaaccagcgatatgaataaagga
tttttaatgttctcagaagaggaaggtattaccattctcaaagacgatccagacgattta
acgcatttagctccaacggctggagatgtatgcgtaccattacccgaatttttgacaaca
gaaatgtttgatgacatattaagtgatacttactgccctttgacactcacggatgactta
ggatcattggattcatcacaatcaagtaacaaaacatcaagcacaagtggtatttcagat
ccgtttatggtttatcgagatgacttcgatttttgtaaatcggaattgagtacatcacca
caattactttctccaaatttatcaaagagtcctggcgatagtctaccatcactgtgtagt
cctggaaattcattaagtgaagatgatcacataagctcatttgtaacattacaaatggaa
tccgaagaagaaaatgaatttattagtaaagcgccctatatatcaatgaatgttggtgat
gatttgccactattaaatatgtcagaggatttgatgtggggtgcattacctccagacgat
aaaatattaacacaaaaaacattaaatatgacaaatacaacgttaaattcaagtctagcg
caattattatgtcaaaaaacttcaacaaatcaacgttcatcaaccacgtataaaacgcat
gaccatggaggagggttaatcaatatgtcagagttgttacttaaatatggaggcgataca
agagatacagcagatcattggacattacaagaaaataatccattaattgagataaataaa
tcgcctccggaaatacctatatcaaatataaagcaaacaaaaacaacaagcatacatacg
gatcgtgctccaaagcgtagtaatgcaaacaataacaatcaatatggtacaatgtcaaaa
cgatgtcgaagtaatcatgaaccgaaagagaaactgtctagtgaattgttaaatcaatta
atgtcgaatacgccaactcgatcagcgtcacaaactaaacaaaagaataatgaatggcca
aattctagaacagatcagccgccaagcgatagtgttcttatgaatttattgggtaatgga
aagtattctggaaaagattcaaaaccaattgatataaacgattcttcaaatcaatctatg
gatgatgatagcgtaaataatgaggatgataatagcctcaacaatgttgttgaagataat
caacgtttgccaaatatagccgtgctacttggaaatcgtacatcaacaattgataatgaa
gaatgtcaaaaacaacgtcatgagttgatacgtaaaaattcattttccttgttagatcct
gaagggcgaactataccatcgttaatggatcttagtcagcaggattatgatgtgaatgca
cccgtcaataataccatattgttacaaggatatgagttgttgaatgcattagaatattct
gatccaatgatgtgttaa
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integrated database retrieval system
