Chrysoperla carnea: 123295729
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Entry
123295729 CDS
T09255
Name
(RefSeq) ATP-dependent RNA helicase DHX8 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
ccrn
Chrysoperla carnea
Pathway
ccrn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccrn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123295729
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccrn03041
]
123295729
Enzymes [BR:
ccrn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123295729
Spliceosome [BR:
ccrn03041
]
Complex C
Other components
Step II factors
123295729
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
AAA_22
DEAD
GIPC1_GH2
AAA_19
nSTAND3
Sigma54_activ_2
AAA_16
Flavi_DEAD
TsaE
Motif
Other DBs
NCBI-GeneID:
123295729
NCBI-ProteinID:
XP_044733102
LinkDB
All DBs
Position
3:9874012..9878989
Genome browser
AA seq
1280 aa
AA seq
DB search
MNEVEKLEHLSLVSKVCTELENHLGLNDKDLAEFIIHLSEENNTFESFKKVLIENEAEFS
DSFIANLLRIIQHMRPVKNKKTNEDDFDAIIEKDDLAKKFPGLAIPNDLQKNIIEKFNSS
DEEDTSDIKNNKKNITKDDVKDTKKDLKQDDSAIVDDAMAELEAFAPSAAKLKEVEKKRS
RSPSPSRSRNRSHSRDRNRRDRSRDKNRKDRSRRDRNCRSRDRNNRSKSRSRERRHRSKS
RSRDRRNHSRSRSRDRSDRRKVYSPDQSKSKHGKRRRSPDLKRRDKSRRSSVDKYSRKDR
DASGDRKTKRESPELDEDPEPGKIYTGKVANIVPFGCFVQIEGLRRRTEGLVHISQLRAE
GRVINVSDVVSRGMKVKVKIISVAGQKVSLSMKDVCQETGRDLNPASHAHLRVADENIGR
NPDRPQGSTASMLRLPGPIDDDDEDVSRKRVNRISSPERWEIKQMISSGCIDKSELPDFD
EETGLLPKEEDGEADIEIEMVEDEPPFLHGHGRALHDLSPVRIVKNPDGSLAQAAMMQSA
LAKERREQKMLQREQEMDSMPTGLNKNWIDPLPEADSRTLAANMRGIGMQTQDLPEWKKH
VIGGKKSSFGKKTNLSLLEQRQSLPIYKLRDELTKAVTDNQILIVIGETGSGKTTQITQY
LAEFGFTARGKIGCTQPRRVAAMSVAIRVAEEFGCRLGQEVGYTIRFEDCTSPETVIKYM
TDGMLLRECLMDLDLKAYSVIMLDEAHERTINTDVLFGLLKQAVQKRPELKIIVTSATLD
AVKFSQYFFEAPIFTIPGRTFPVEVLYTKEPETDYLDASLITVMQIHLREPPGDILLFLT
GQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFEPAPPGSRKVVIATNI
AETSLTIDGIYYVVDPGFVKQKVYNSKTGMDSLVVTPISQAQAKQRAGRAGRTGPGKCYR
LYTERAYRDEMLPTPVPEIQRTNLATTVLQLKTMGINDLLHFDFMDAPPVESLIMALEQL
HSLSALDNEGLLTRLGRRMAEFPLEPNLSKMLIMSVALQCSDEILTIVSMLSVQNVFYRP
KDKQALADQKKAKFNQAEGDHLTLLAVYNSWRNNKFSNAWCYENFVQIRTLKRAQDVRKQ
LLGIMDRHKLDVVSAEKNTVRVQKAVCSGFFRNAAKKDPQEGYRTLVDSQVVYIHPSSAL
FNRQPEWVIYHELVQTTKEYMREVTTIDPKWLVEFAPAFFKFSDPTKLSKFKKNQRLEPL
YNKYEEPNAWRISRVRRRRN
NT seq
3843 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaagtagaaaagcttgagcatttgtctctcgtttcgaaagtgtgcacagaatta
gagaatcatttaggtttaaatgataaagatttggctgaatttataattcatttatcagaa
gaaaacaacacatttgaatctttcaaaaaagttttaatagaaaatgaagcagaattttcg
gattcttttattgcaaatttattacgaattatacaacatatgcgaccagtaaagaataag
aaaactaacgaagatgattttgatgctattatcgagaaagatgatttggccaaaaaattc
ccaggattagcgatacctaacgatttacaaaaaaatataattgagaaatttaatagctca
gacgaagaagatacatcggatattaaaaataataagaaaaacattacaaaagatgatgtt
aaagatacgaaaaaggatctgaaacaagatgattccgccattgtcgatgatgcaatggct
gaattagaagcatttgcaccatccgcagctaaattaaaagaagttgaaaaaaaacgaagt
agaagtcctagtccaagtagaagtcgcaacagaagtcatagtcgagatagaaatcgaaga
gatcgtagtcgagataagaatcgtaaggatagaagtcgaagagatcgaaattgtcgaagt
agggatcgtaataaccgttcaaaaagtcgtagcagagaacgtagacatcgttcaaaaagc
cgaagtagggaccgtagaaatcattcaagaagtcgaagtagagatagatcagatcgtcga
aaagtatacagtccagatcaaagtaaaagcaaacatggtaaaagacgcaggtcacctgat
ttgaaacgtcgcgataaatctagacgctcgtccgtggataagtattctagaaaagatcgt
gatgccagtggggatcgtaaaacaaagcgagaaagtccagaattagacgaagatcctgaa
ccaggtaaaatttacactggtaaagtggcaaacattgttccatttggatgtttcgtacag
attgagggtctacgaagacgtactgaaggtttagtacatatttcacaattacgtgcagaa
ggacgagttataaacgtttctgatgttgtgtctcgtggtatgaaggttaaagtgaaaatt
atctcagtagcaggccagaaagtttctttatcaatgaaagatgtatgtcaagaaacaggc
cgtgatttgaatcctgcttcacacgcacatttgcgagttgcagatgaaaatattggcaga
aatcctgatcgcccacaaggatctaccgcttccatgctacgattaccaggtccaatcgac
gatgatgatgaagatgtatctaggaaacgagttaatcgtatttctagtcctgaacgttgg
gaaattaaacagatgatttcttctggttgtatagataaaagtgagttgcccgattttgac
gaagaaactggtttattaccaaaagaagaagatggggaagctgatatcgaaattgaaatg
gtagaagatgagccaccatttttacacggacatggaagagcattgcacgatcttagtcct
gtaagaattgttaaaaatccagatggatctttggcacaagctgcaatgatgcaatcagcc
ttagctaaggaacgaagagaacaaaaaatgttacaacgggagcaagaaatggattcaatg
ccaacaggactgaataaaaattggattgatcctctgcctgaagccgacagccgtacttta
gcagcaaatatgcgaggtattggaatgcaaactcaagatcttccagaatggaaaaaacat
gtaattggtggtaaaaaatcatcatttggaaagaaaacaaatctttcacttcttgaacaa
cggcaatcgttgcccatttataaattacgtgatgaattaacaaaagctgtaaccgataat
caaattttaattgttattggtgaaactggatcaggtaaaacaacacaaattacacagtat
ttagccgaatttggttttacggcacgtggaaaaattggttgtacacaaccacgtcgtgtt
gctgcaatgtctgtagctatacgtgttgctgaagaatttggttgtcgtttaggacaagaa
gttggatatactatacgttttgaagattgtacaagccctgaaacagttatcaagtacatg
acagatggtatgttacttcgagaatgtcttatggatttggatttaaaagcttattcagta
attatgttggacgaggctcatgaaagaacaattaatactgatgtgttatttggtttactt
aaacaagctgtacaaaaaagacccgaattaaaaataattgtaacatctgccacattagac
gctgtaaaattctctcaatatttcttcgaagcacctatatttacaatacctggtcgtaca
ttccccgttgaagtattatatacaaaagaaccagaaactgattatttggatgcaagttta
atcactgtcatgcaaattcatttacgggaacctccaggagatattctattatttttaacg
ggtcaagaagaaattgatacggcatgtgaaattttatatgaacgtatgaaatcattagga
cctgatgtacctgaattaattattttacctgtttattctgcattgccatctgaaatgcaa
acgcgtatttttgaaccagcaccacctggcagtcgtaaagttgttattgccacaaatatt
gctgaaacctcgttaacaattgatggtatttactatgtggttgatcctggttttgttaag
caaaaagtttataattcaaaaactggtatggattctttggtcgttacaccaatttctcag
gctcaagctaaacagagagcgggaagagctggtcgaacagggcctggcaaatgttacaga
ttatacacggaacgtgcttatcgagatgaaatgttaccaacacctgttcctgaaattcaa
agaactaatcttgcaacaacggttttacagttaaagactatgggtattaatgatttactt
cattttgattttatggatgctccgccagtggaatcattaattatggcattggaacaatta
cattcattgtctgccttggataatgaaggcttattaactcgacttggaaggaggatggca
gaatttcctttagaaccaaatttatcaaaaatgctgataatgtctgtggcacttcaatgt
tctgatgaaatattaacaatagtcagtatgttgtccgttcaaaatgtgttttatcgaccg
aaagacaaacaagcactcgccgatcagaaaaaagcaaaatttaatcaggccgaaggtgat
catttaacattattagctgtgtacaatagttggcgaaataataaattctcaaatgcatgg
tgttatgaaaattttgtacaaatacgaacattaaaacgtgctcaagatgttcgaaaacaa
ttattgggtatcatggatcgtcataaattagatgtagtatcggctgaaaaaaatacagta
cgcgtacaaaaagctgtatgctcaggattctttcgtaacgcagcaaaaaaagatccgcaa
gaaggatatcgtacattggttgatagtcaagttgtgtatattcatcctagtagtgctcta
tttaatcgacaacccgaatgggttatttatcatgaattggtacaaactacaaaagaatac
atgcgtgaagtaacaacaattgatccaaaatggttagttgaatttgctccagcattcttt
aaattctcagatccaacaaaacttagtaaatttaagaaaaatcaacgattggaaccattg
tataataaatatgaagaaccaaacgcatggcgtatatctcgagtacggcggagacggaat
taa
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