Chrysoperla carnea: 123296821
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Entry
123296821 CDS
T09255
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2 isoform X1
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
ccrn
Chrysoperla carnea
Pathway
ccrn03020
RNA polymerase
ccrn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccrn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
123296821
09124 Replication and repair
03420 Nucleotide excision repair
123296821
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccrn03021
]
123296821
03400 DNA repair and recombination proteins [BR:
ccrn03400
]
123296821
Enzymes [BR:
ccrn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
123296821
Transcription machinery [BR:
ccrn03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
123296821
DNA repair and recombination proteins [BR:
ccrn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
123296821
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
123296821
NCBI-ProteinID:
XP_044734420
LinkDB
All DBs
Position
3:93042099..93048183
Genome browser
AA seq
1175 aa
AA seq
DB search
MYDEEEDVYDEGAGEEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DSPQIELQAEAQHTSGEMENPPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIVKEGEEPIVTQHQKTFIGKIPIMLRSSFCLLSKLTDRDLTELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAFKSEIRSCLEHSSRPTSTLWVNMM
ARGGQSIKKAAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQ
KFIDRGKDFNLDLAIKTKMITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSE
VSMIRDIRDREIRIYTDAGRISRPLIIVENGSLLLKKSHIDMLKDREYNNYGWQGLVGSG
VVEYIDTLEEETTMIAISPDDLRNSKEYAYCSTYTHCEIHPAMILGICASIIPFPDHNQS
PRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSI
VAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKRIGEQEEQFEKPTRQTCQG
MRHALYDKLDDDGIISPGVRVSGDDVVIGKTMTLPENEDELEGTTKRYTKRDASTFLRNS
ETGVVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCE
GLTPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQKISTLLQEYG
YQLRGNEVMYNGHTGRKINAQVFFGPTYYQRLKHMVDDKIHSRARGPLQILVRQPSEGRA
RDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFECKG
CKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMVI
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgtatgacgaagaagaagatgtgtatgatgagggtgcaggcgaagaaatcagttccgag
ttgtggcaagaagcctgttggattgttatcaacgcttattttgatgaaaaaggtttagta
cgacaacaattggacagttttgatgaatttattcaaatgtctgttcaaagaattgttgaa
gattcaccacaaattgaattgcaagcagaagctcaacataccagcggagaaatggagaat
cctccacgatatttattaaaattcgaacaaatctatttatcgaaaccgacacattgggaa
aaagatggtgcaccttcacctatgatgccaaatgaagcgcgtttaagaaatttaacatat
tcagcgcctttgtacgtggacattaccaaaactattgtcaaagaaggcgaagaaccgatc
gttacgcaacatcaaaaaacttttattggtaaaattcctataatgttacgatcgagtttt
tgcttgttaagtaaattaacggatcgtgatttaactgaattgaatgaatgtccgttggat
ccaggcggttattttattattaatggttctgaaaaagtattaattgcacaagaaaaaatg
gctacaaatacagtttatgtgttttcaatgaaagatggaaaatatgcttttaaatcagaa
attcgatcttgtttggaacatagttcaagacccacgtccacattgtgggtgaacatgatg
gcacgtggtggtcaatcgataaagaaagccgctattggtcaacgtataattgcaattttg
ccatacatcaaacaggaaattcctataatgattgtattccgagcgttgggttttgtagct
gatcgtgatatactcgaacatatcatttatgattttgacgatcccgaaatgatggaaatg
gttaaaccgtctttagatgaagcgttcgtaatacaagagcaaaatgttgcgttaaatttt
attggggcgagaggtgcaagacctggtgttacaaaagaaaaacgtattaaatatgcaaga
gaaattttacaaaaggaaatgttaccacatgttggtgtttctgatttttgtgagactaaa
aaggcatatttcttaggttatatggttcatcgattattattggcagcgttgggtcgtcga
gaattagatgatcgggatcattatggcaacaaacgtttagatttggctggacctctatta
gcttttctatttcgtggtttatttaaaaatttaatgaaagaagttcgaatgtacgcacag
aagtttatcgatcgtggcaaagatttcaatcttgatttagcaatcaaaacaaaaatgata
actgatggattacggtattcattggctactggaaattggggcgatcaaaagaaagctcat
caagctcgtgctggtgtatctcaagtattgaatcgtttaacatttgcatcaactctatca
catttacgacgtgttaattcaccaattggccgtgatggtaaattagccaagccacgtcaa
ttacataacacgttgtggggtatgatatgtccagctgaaacaccggaaggtgctgctgta
ggtcttgtaaaaaatttagctttaatggcttatatttctgttggttcacaaccgtcacca
attcttgagttcttggaagaatggtctatggaaaatcttgaagaaattgcaccatctgca
attgctgatgctacgaaaatttttgtaaatggatgttgggttggcattcatagagatccc
gaacaattaatggcaacgttacgtaaattacgacgtcaaatggacattatcgtatctgaa
gtatcaatgattcgtgatattcgtgacagagagattcgtatctacacagatgctggacga
atatctagaccgctgatcattgtggagaatggaagtctattgttgaagaagtcacacatt
gacatgttaaaagatcgtgaatacaacaattatggatggcaaggattagttggatctggt
gtagtcgaatatatcgatacgttagaagaggaaactactatgatcgctatttcaccggat
gatctacgaaattcaaaggagtacgcgtattgtagtacttatacgcattgtgaaattcat
ccagctatgattcttggaatttgtgcatcaattataccattccctgatcataaccaaagt
cctaggaatacttatcaaagtgctatgggtaaacaagctatgggtgtatatatcacaaat
ttccacgtacggatggacacgttggctcacgtactatattatccacataaaccactggta
acaacaagatccatggaatatttacggttcagagagttaccagctggaattaatagtatt
gtagcaattttatgttacactggatacaatcaagaagattctgttattttgaatgcatct
gctgtggagcgaggatttttcagatcagtattttaccgttcatataaagattccgaatca
aaacgaatcggtgaacaagaagaacaatttgagaaaccaacacgacaaacatgtcaaggc
atgcgtcatgcattgtacgataaactagacgatgatggtatcatttcaccaggtgttcgt
gtatccggtgatgatgtggttattggtaaaacaatgacattacctgagaatgaagatgaa
ctggaaggaacaacaaaacgttatacaaaacgtgatgcgtcaacattcttacgtaatagt
gaaacaggggttgtagatcaagtcatgttgaccttgaattctgaaggttataagttttgt
aagattcgtgtacgatcggtgcgtataccacaaattggtgataagtttgcatcaaggcat
ggacaaaaaggaacgtgtggaattcagtataggcaagaggatatgccgtttacatgcgaa
ggtttaacaccggatattataattaatcctcacgctatcccatctcgtatgacaattggc
catttaattgaatgtattcaagggaaagtatcatcgaataaaggggaaattggtgatgct
acaccttttaacgatgccgtcaacgtacaaaaaatctcaactttattacaagaatacggt
tatcaattacgaggtaacgaagtcatgtacaatggacacactggtcgtaaaattaatgcc
caagtattctttggaccaacctattatcaacgtttgaagcacatggtggatgataaaatc
cattcaagagcacgtggacctcttcagattttagtacgtcaaccgagtgaaggtcgtgcc
cgtgatggtggtctacgtttcggtgaaatggaacgagattgtcaaatttctcatggtgcg
gctcaattccttcgagaacgtttatttgaagtatctgatccgtatcgaatacatgtttgt
aatttttgtggtttgattgccattgcaaatttacgaaataatacatttgagtgtaaagga
tgcaaaaataaaacacaaatcagtcaagtacgattaccatatgcagccaaattattgttt
caagaactgatgtcaatgaatattgctccgagattaatggtcatttaa
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