Chrysoperla carnea: 123297545
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Entry
123297545 CDS
T09255
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
ccrn
Chrysoperla carnea
Pathway
ccrn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccrn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123297545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccrn03041
]
123297545
03009 Ribosome biogenesis [BR:
ccrn03009
]
123297545
Enzymes [BR:
ccrn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123297545
Spliceosome [BR:
ccrn03041
]
Complex A
U2 snRNP components
U2 related factors
123297545
Complex B
123297545
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
123297545
Ribosome biogenesis [BR:
ccrn03009
]
Eukaryotic type
90S particles
Helicases
123297545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_19
AAA_22
SRP54
nSTAND3
Flavi_DEAD
ResIII
ABC_tran
T2SSE
ATPase
AAA_7
AAA_30
TsaE
AAA_25
Motif
Other DBs
NCBI-GeneID:
123297545
NCBI-ProteinID:
XP_044735184
LinkDB
All DBs
Position
4:complement(52214403..52221280)
Genome browser
AA seq
713 aa
AA seq
DB search
MSKRRIDLLDPFIKKKREERGISTATTPAVPGTTNPFTGLPYTQRYHEFYRKRITLPVFE
YRADFMRLLAQHQCIVLVGETGSGKTTQIPQWCVEYSRSIGKKGVCCTQPRRVAAMSVAQ
RVSEEMDVALGQEVGYSIRFEDCSSAKTVLKYMTDGMLLREGMSDPMLETYQVILLDEAH
ERTLATDILMGVLKEVVKQRNDLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEIFY
TPEPERDYLEAAIRTVIQIHMCEEVSGDILLFLTGQEEIEEACKRIKREIDNLGPEVGEL
KCIPLYSTLPPNLQQKIFEAAPPNKANGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAK
QKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEKAYKNEMQDNTYPEIL
RSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALDDDGNLTDLGAVMA
EFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNEAKKAADDAKMRFAHIDGD
HLTLLNVYHAFKQNSEDPQWCYDNFVNYRSLKSGDNVRQQLSRIMDRFNLKRTSTDFTSK
DYYINIRKALVNGFFMQVAHLERTGHYLTIKDNQIVQLHPSTCLDHKPEWVIYNEFVLTT
KNYIRTVTDIKPDWLIKIAPQYYDLQNFPQCEAKRQLEIIQTKLESKLFQQGF
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaacgaagaatagacttattggatccatttattaaaaagaagagagaggaacgt
ggtattagtactgcaactacgcccgcagtacctgggacaacaaatccatttactggatta
ccatacacacaacgttatcatgaattctatagaaaacgtattactttacctgtttttgaa
tatcgtgccgattttatgcgactattagcacaacatcaatgtattgtgttagtcggagaa
actggttccggaaaaactacacagattccacaatggtgtgtcgaatattcaagatcgatt
ggtaaaaaaggagtttgctgtactcaaccccgtagggtcgctgctatgtcagtcgcacaa
cgtgtgtctgaagaaatggatgtggcattaggacaagaagttggttacagtattcgattt
gaggattgttcatcggctaagacagttttgaaatatatgactgatggtatgttgttacga
gaaggtatgagtgatccaatgctagaaacgtaccaagtaatactgctggatgaagctcac
gaaagaacacttgcaacagatatattaatgggtgtattaaaagaagttgtgaaacaaagg
aatgacttaaaattggttattatgtctgcaactttagatgctggaaaatttcaacaatat
tttgataacgcacctttaatgaatgtacctggtcgtacgcatcctgtagaaattttttac
accccagaacctgaaagagattatttagaagctgctattcgaactgtaatacaaattcat
atgtgtgaagaagttagtggagatattcttttgtttttaactgggcaagaggaaattgaa
gaagcatgtaaaagaattaaaagagaaattgataatctaggcccagaagttggtgaactg
aagtgtataccattgtattcgacattaccaccgaatcttcaacaaaaaattttcgaagcg
gcaccaccaaataaagcaaacggtgcaatcgggcgaaaagttgtagtgtctacaaatatt
gctgaaacatctttaacaatagatggtgtggtgttcgtaattgatcctgggtttgctaaa
caaaaagtttataatccacgaattcgagtagaatcacttttagtgtccccaattagcaaa
gcttctgcacaacaaagagctggacgtgctggtcgtacaagacctggtaaatgtttccgt
ttatacacagaaaaagcatataaaaatgaaatgcaagataacacatatccagaaattctt
agatctaatttgggttctgttgtgttacaattaaaaaaacttggtattgacgatttagtg
cattttgattttatggatccaccagcaccagaaacattgatgcgtgccttggaattattg
aattatttagctgccctagatgatgatggtaatcttactgacttgggagctgttatggct
gaatttccactggatccacaacttgctaaaatgttaatcgccagttgtaatcacaattgt
tcaaatgaaatattatccatcacagctatgctgtcagtcccgcagtgtttcgtgcgaccc
aatgaggctaaaaaagcagcagacgacgccaaaatgagatttgcccacatcgacggtgat
catcttaccttgctcaatgtgtatcacgcttttaaacaaaactcagaggatccacagtgg
tgttacgacaattttgtaaattatcgatcattaaagtctggtgataatgtgagacaacaa
ttgtcaagaattatggatagatttaatttaaaacgtacttcaacggattttacgagtaag
gattattacattaacattcgaaaagctctcgtcaatggattcttcatgcaggtggcgcat
ttagaaagaactggacattaccttaccataaaagataaccaaattgtacagctacatcct
tcaacgtgcttagaccataaaccagaatgggttatctacaatgaattcgtgttaactact
aaaaattatattcgaacagttacagatattaaacctgattggttgataaaaatagcacct
caatattatgatttacaaaatttcccacaatgcgaagccaaacgacaactagaaataatt
caaacaaaattggaatcaaaattatttcaacaaggattttaa
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