Chrysoperla carnea: 123298559
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Entry
123298559 CDS
T09255
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ccrn
Chrysoperla carnea
Pathway
ccrn03013
Nucleocytoplasmic transport
ccrn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccrn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
123298559
03015 mRNA surveillance pathway
123298559
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccrn03019
]
123298559
Enzymes [BR:
ccrn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
123298559
5.6.2.5 RNA 5'-3' helicase
123298559
Messenger RNA biogenesis [BR:
ccrn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
123298559
mRNA cycle factors
Common to processing body (P body) and stress granule
123298559
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
NAT10_TcmA_helicase
UvrD-helicase
NPHP3_N
ATPase
SRP54
nSTAND3
AAA_22
AAA_16
AAA_32
Motif
Other DBs
NCBI-GeneID:
123298559
NCBI-ProteinID:
XP_044736532
LinkDB
All DBs
Position
4:complement(48135863..48143020)
Genome browser
AA seq
1114 aa
AA seq
DB search
MSVDAYGPSSQTLTFLETEETDLIGADTQGSDFEFTDFTLPSQSQTQASQLDHGSVQIPS
KINGNLKSSSNDISAKVSSTTQGIAELQFEEEDEEFYSKELPDYACKYCGIHEPSCVVMC
NLCKKWFCNGRGNTSGSHIINHLVRAKHKEVTLHKDGPLGETVLECYSCGVRNVFVLGFI
PAKADSVVVLLCRQPCAAQNSLKDMNWDQEQWKPLISDRCFLSWLVKIPSEQEQLRARQI
SAQQINKLEELWKDNVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADYD
KRLKESQTQENIEVRWDVGLNKKTIAYFTLAKTDGDMKLMHGDELRLRYVGEMHKPWAGV
GHVIKVPDNYGEDIGIELKNNSGAPTDCTNNFVVDFIWKSTSFDRMQLALRKFAVDDSSV
SAYIYHRLLGHEVDEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHALQRPLSLIQGPPGTG
KTVTSATIVFQLVKQNGGPVLVCAPSNTAVDQLTEKIHRSNLKVVRLCAKSREAIDSPVS
FLALHNQIRGMDTNTELQKLQQLKDETGELSSVDEKRYRTLKKASEKELLEAADVICCTC
VGAGDPRLARIKFHSILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAR
AGLSQSLFERLVVLGIRPFRLEVQYRMHPELSRFPSNFFYEGSLQNGVCADERKLCKIDF
PWPVPDKPMFFYVTQGQEEIAGSGTSYLNRTEAANVEKITTRFLRCGVKPEQIGVITPYE
GQRAYLVQYMQYQGSLHSKLYQEIEIASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDPR
RLNVALTRAKYGIIIIGNPKVLSKQPLWNHLLNFYKEQKVLVEGPLNNLKESLIQFAKPK
KLVNSSNPGSHFMSTSMYDAREALVPGSIYDRTGQINGQYNYPRGGMPLDMFSRTHDPIS
YISPERAQATLNNLPVPVGMFMNMAHVPPRFYNQQQQSMQARQTQRNNRITTTKNPNLRG
MRNKGVLSQTNSSQDQTQPFSQGLQLTQSMSQNMSQPGFSLSQPGLSQAELSQDSYMIEY
QSQMDGLLSQDSTYQGDRSAFAFQPTGTQFSQPY
NT seq
3345 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggatgcatatggtccaagttctcaaactctcacgtttttggagaccgaagag
acggacttaattggagccgatacacaaggttctgattttgaatttactgattttacattg
ccatctcaaagtcaaactcaagcttctcaacttgaccatggtagtgtacaaataccaagc
aagataaatggtaatttaaaaagttcatctaacgatatctctgcaaaagtgtcatcgaca
acacaaggtattgcagaacttcaatttgaagaggaagatgaagaattttacagtaaagaa
ttaccagattacgcatgtaaatattgtgggattcatgaacctagttgcgttgttatgtgt
aatttatgtaaaaaatggttctgtaatggacgtggtaatacatcaggcagtcatattatc
aatcatttagtgcgagctaaacataaggaggtcacattacataaagatggaccattgggc
gaaacagttttagagtgttatagttgtggagttcgtaatgtttttgtgttgggcttcatt
cccgccaaggctgattcggttgtcgtgctattatgtcgacaaccttgtgcagcacaaaat
tctctaaaagatatgaattgggatcaagaacagtggaaaccattaatttctgatcgttgc
tttttatcttggcttgttaaaattccaagcgaacaagagcaactacgagctagacaaatt
tctgctcaacagattaataaattggaagagttatggaaagataatgtggatgcaacattc
caagatttagaaaaacctggcgttgacgaagaacctcaacaggttttgttgcggtatgaa
gatggttaccaatatcaaaacatatttggtcctctagtcaagctagaagcagattatgat
aaacgattaaaggaatcacaaacgcaagagaatattgaagtacgttgggatgtaggatta
aacaaaaaaacaattgcttattttacattagcaaaaactgatggagatatgaaattaatg
catggtgacgaactaagattacgttatgttggagaaatgcataaaccttgggctggagtt
ggacacgttattaaagtacccgataattatggtgaagatattggaattgaattgaaaaat
aattctggagcaccaacggattgtacaaacaactttgttgttgattttatttggaaaagt
accagttttgatagaatgcaattggcattacgaaaatttgcagttgacgatagttccgtt
tctgcttatatttatcatcgattattgggacatgaagtggatgaagttctttttagatgt
catttacctaaacatttttctgccccgaatctaccagatttaaatagatcacaagtgtat
gcagttaagcatgcattacaacgaccattgtcattaattcaaggcccacccggtactgga
aaaactgtaacttctgctacaattgtttttcaattagtgaaacagaatggaggtccagtc
ttagtatgcgctccaagcaacacagcagttgatcaattaactgagaaaatacatcgttcc
aatttgaaagttgtacgattgtgcgctaaatcccgtgaagctattgattcacctgtaagc
tttttagcacttcacaatcaaattcgtggaatggatacaaacacggaattgcaaaaacta
caacaattaaaagatgaaacaggtgaattgagttcggtagatgaaaaacgttatcgtact
cttaagaaagcctctgaaaaggaattgcttgaagctgcagatgttatttgttgtacatgt
gtcggtgctggagatcctagattagctagaattaaattccattcaattttaattgacgaa
agtatgcaatctacggaaccagaatgtatggtacctgttgtattaggagctaaacagctt
atacttgttggagatcattgccagcttgggccagttgttatgtgtaaaaaagctgctaga
gctggtttatctcaaagtttatttgaacgacttgtagttttgggtatacgcccatttaga
ttagaagtccaatacagaatgcatccagaattgtcacgatttccatcaaatttcttttat
gaaggaagtctccaaaatggagtgtgcgctgatgagcgaaaattgtgtaaaattgatttt
ccatggccggtaccagataaacccatgtttttctacgttactcaaggtcaagaagaaatt
gctggttctggtacaagttatttaaatagaaccgaagcggctaacgttgaaaaaattaca
actagatttttacgttgcggtgtaaaaccagaacaaattggagtaattactccgtatgaa
ggccaaagagcttatttagttcaatatatgcaataccaaggttcgcttcacagtaaactt
tatcaagaaatagaaattgctagtgttgatgcttttcaaggtcgagaaaaggatataatt
attatgtcatgtgtacgatcaaatgaacatcaaggaataggtttccttaatgatccccga
cgtttaaatgttgcgttaactcgtgctaaatatggaattataattattggaaatcccaaa
gttttatcaaaacaaccactttggaatcatttgctgaacttttataaagaacaaaaggtg
cttgttgaaggaccgttaaataatttaaaggaatcccttatacaatttgcaaaaccaaag
aaattggttaactcatcaaatcctggctctcattttatgtcaacatcaatgtatgatgct
cgtgaagcattggtacctggatcaatatacgatcgtacagggcaaattaatgggcaatac
aattatccacgaggaggaatgcctttagacatgttcagtcgcacccatgatcccattagt
tacatttcaccagaacgtgctcaagctacattaaataatttaccagtacccgttggtatg
tttatgaatatggcacatgttccgccacgattttacaatcaacaacaacaatcaatgcaa
gcaagacaaactcaacgaaataatcgtattacaactaccaaaaatccaaacttacgaggc
atgcggaataagggtgttttgagtcaaaccaacagcagtcaagatcaaacacaaccattt
agccaaggattgcaattaacacaaagtatgtcgcaaaatatgtcacagccaggctttagt
ttatcacagcctggtttatcacaggcggaattgagtcaagattcttacatgattgaatat
caatcacaaatggatggtctactatcacaagattctacataccaaggtgaccgctcagca
tttgcctttcaaccaactggtacacaattctctcagccatattga
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