Chrysoperla carnea: 123298688
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Entry
123298688 CDS
T09255
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ccrn
Chrysoperla carnea
Pathway
ccrn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccrn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123298688
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccrn03019
]
123298688
03041 Spliceosome [BR:
ccrn03041
]
123298688
Messenger RNA biogenesis [BR:
ccrn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
123298688
Spliceosome [BR:
ccrn03041
]
Complex B
Other components
Prp19-related factors
123298688
Complex C
123298688
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_12
TPR_8
TPR_15
Mad3_BUB1_I
PPR
RPN7
NRDE-2
DHR-2_Lobe_A
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
123298688
NCBI-ProteinID:
XP_044736719
LinkDB
All DBs
Position
1:complement(72838076..72842638)
Genome browser
AA seq
860 aa
AA seq
DB search
MYVKLQEQRSQLIFNDEDLPYEEEILRNPYSVKHWLRYIDHKKKSPKHEINIIFERALRE
LPGSYKLWYNYLRGRRRQVKGRCITDPEYEDVNNAFERALVFMHKMPRIWMDYCTFMTLQ
CKIRRTRHTFDKALRALPITQHHRIWPLYLSFLNKHDIPETAIRVYRRYLKLCPENAEEY
IEYLISINKLDEAAVVLAGIVNNETFVSLNGKSNHQLWNELCELISKNPSQIKSLNVDAI
IRGGLRRYTDQLGHLWNSLADYYVRSGLFEKARDIYEEAIQTVTTVRDFTQIFDAYAQFE
ELSLSKRMEEVAQMENPSEEDDIDLELRLARFEYLMERRLLLLNSVLLRQNPHNVQEWHK
RVQLYEGKAHEIINTYTEAVQTVQPKLAVGKLHTLWISFAKFYEQNGQIEDARLIFEKAI
NVPFVKVDNLATIWCEWAEMEIRNENFEESLRLMHRATAMPSRRVAYHDENETVQARLYK
SLKLWSMYADLEESFGTFKSCKAVYDKILDLKIATPQIIINYALFLEEHKYFEESFRAYE
KGIALFKWPNVFDIWNTYLTKFLKRYGGTKLERARDLFEQCLENCPAKFAKALYLLYAKL
EEEYGMTRHAMAVYERATTAVLPEEMFELFNIYIKKASEIYGIPKTRQIYEKAIEVLPEE
NTREMCLRFAEMETKLGEVDRARAIYAHCSQMCDPRVTVDFWQTWKEFEVRHGNEDTMRE
MLRIKRSVQATYNTQVNMMSAQMLSSAGTIAGTIADLAPGAKDGMRLLEAKAVEMSANTV
VRSGTSGGNIMFVRGETAGTDKVNNPDEINIDDVEMDDEDESGDENEDAAIPVEQQQVPA
EVFGNLKRKQGDDSEEDDND
NT seq
2583 nt
NT seq
+upstream
nt +downstream
nt
atgtacgttaaactacaagaacaaaggagtcaattaattttcaatgatgaagacctaccg
tatgaagaagaaatcttgcgaaatccatattcagtcaaacattggttaagatatatcgat
cacaagaaaaaatctcccaaacatgaaataaatatcatatttgaacgagcgctgcgggaa
ttacccggctcatacaaactatggtacaattaccttcgtggacgtcggcggcaagtaaaa
ggtcggtgtataaccgatcccgaatacgaagatgtaaacaatgcatttgaacgagctctt
gtatttatgcataaaatgccccgtatatggatggactattgcacgtttatgacactacaa
tgcaaaattcgtcgaacacggcatactttcgataaggctctacgagctttaccaataaca
caacatcatcggatttggccgttatatcttagttttttaaataaacatgatatccctgaa
acggctatacgtgtatatcgacggtatttaaaattatgccctgaaaatgccgaagagtat
atcgaatatttaataagtattaataagcttgacgaagctgcggttgtcttagccgggatt
gtaaataacgaaacgtttgtatcgcttaacggaaaatcaaatcatcaactttggaacgag
ctatgtgagctgatatcgaaaaatccatcacaaattaaatcgttaaatgtagatgcgatt
attcgtggaggtttgcgtcgatatacagatcaactaggtcacttatggaattctttagca
gattattatgtgcgaagtggtttatttgaaaaagctcgagatatttatgaagaggccatc
caaacagttacaacagtccgcgattttacacaaatattcgatgcatatgctcaatttgaa
gaactaagtttaagtaaacgtatggaagaagttgctcaaatggaaaatccatccgaagaa
gatgatattgatctagaattacgtttagcacgatttgaatatttaatggaacgccgctta
ttattactcaattctgttttacttcgacagaatccacataatgtacaagaatggcataaa
cgtgtacagctttacgaaggcaaagcacatgaaattatcaatacgtatacagaagctgta
caaacagtacagccaaaattagctgttggaaagcttcacacactatggatatcatttgca
aagttttacgaacaaaatggacagattgaagatgcacgattaatatttgaaaaagccatt
aatgttccatttgtgaaagttgataatttggcaacgatatggtgtgaatgggctgaaatg
gaaattcgaaatgaaaattttgaggaaagtttacgcttaatgcatcgcgcaactgctatg
ccatcgcgtcgtgttgcatatcacgatgaaaatgaaaccgtacaagcacgattgtataaa
tcgcttaaattgtggtcaatgtacgcagatttagaagaaagctttggaacttttaagtca
tgcaaagctgtttatgacaaaatcttagatttaaaaattgccaccccacaaatcatcatt
aactacgctttatttttagaagagcacaaatatttcgaagagtcttttcgagcgtacgaa
aagggtatcgcattatttaaatggccaaatgttttcgatatatggaatacatatttaacg
aagttcttaaagcgatatggtggcacaaagttggaacgagctcgtgatttattcgaacaa
tgtttagaaaactgtccagcgaaatttgctaaagcattgtatttattatatgcaaaatta
gaagaagaatatggaatgactcggcatgcaatggctgtatatgaacgcgcaacaaccgct
gttttaccagaagaaatgtttgagctttttaatatttacataaaaaaagcatcagaaata
tatgggattccaaaaactagacaaatttacgagaaagctattgaagtattaccagaagaa
aatacacgagaaatgtgtttacgttttgctgaaatggaaacaaaacttggtgaagtcgat
cgtgctcgagcaatctacgcacattgctcccaaatgtgtgatcctcgcgtgaccgttgat
ttctggcaaacgtggaaagagttcgaagtacgacatggtaacgaagatacaatgcgtgaa
atgctacgtattaagcgtagtgtccaagcaacgtacaacacacaagtaaacatgatgtct
gcgcaaatgttatcttcggcaggtacaatagctggaacgattgcagatctagcaccaggt
gccaaagatggtatgcgattattagaagcaaaagctgttgaaatgtctgcaaatacagtc
gtacgaagtggtactagtgggggcaatattatgtttgttcgaggtgaaactgcaggaacg
gataaagttaataatcctgatgagattaatattgatgacgttgaaatggatgacgaggat
gaatcaggagatgaaaacgaagatgctgctataccagtagaacagcaacaagtacctgcg
gaagtatttggaaatttgaaacggaaacaaggggatgatagtgaagaagatgataatgat
taa
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