Chrysoperla carnea: 123299265
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Entry
123299265 CDS
T09255
Name
(RefSeq) collagen alpha-1(XVIII) chain-like isoform X1
KO
K06823
collagen type XVIII alpha
Organism
ccrn
Chrysoperla carnea
Brite
KEGG Orthology (KO) [BR:
ccrn00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ccrn04147
]
123299265
00535 Proteoglycans [BR:
ccrn00535
]
123299265
00536 Glycosaminoglycan binding proteins [BR:
ccrn00536
]
123299265
Exosome [BR:
ccrn04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
123299265
Proteoglycans [BR:
ccrn00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
123299265
Glycosaminoglycan binding proteins [BR:
ccrn00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
123299265
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
Motif
Other DBs
NCBI-GeneID:
123299265
NCBI-ProteinID:
XP_044737536
LinkDB
All DBs
Position
4:19532164..19540640
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AA seq
913 aa
AA seq
DB search
MPSLAEVQCETAFMSFPEGSGDELFPNADDLSITDAEGEASLSEGSGAGIPPFVIPPPPS
PDFPVGRTSKGDKGDRGARGPPGESIRGPPGPPGPPGPQGPIGPVGLPGLPYSGDDITGF
GEDNPYPLGSPTGQCSCNITSIRGPPGPPGADGPVGIPGMTGLPGPGGERGAPGPRGEKG
DRGDTGNRGPEGQQGQKGEPGRDGMPGIAGPPGPPGPTTHLDFTSFDPSWKPRTIFKDTI
TGPAARPGPPGPKGDVGSQGPQGKQGPRGEPGSKGERGETGIKGDRGERGHHGAQGAQGF
KGEPGVPGMDGIPGLPGANGRPAEKGEKGEPGKPGPPGTPAVAMVGAGDGYMMTGIGEKG
EPGEKGEPGVKGEKGERGEQGQGGLPGMNGAPGSSGEKGEPGKDGEAGPQGLPGLKGERG
PPGPTSIAGSGTDFITIKGDKGDQGKRGRRGKEGPMGPVGPPGKPGPPGDIGLPGWMNSL
KGRPGVPGAPGPKGEKGDTADISLLRTLKGDKGDAGTPGRDGHPGPAFEGPPGPPGPPGP
PGPPGIPGISITGPKGEPGYAPSRFAYGEPNFGPTRSGPRSSLEELKAIRELEQLKKSQK
ETFSATVHSKYDEKNPAKVVPGAVTFQTNEDMMRMSPMSPVGTLAYIIDEEALLVRVNNG
WQYIALGSMVPITTPAPPTTAAPAIMPPFEASNLINNVPQPVDGPNWFPKMLRMAALNEP
YTGDMHGVHGADLACYRQARRAGLHGTFRAFLSSRVQNIDSIVSLADRDLPVVNLRGDVL
FNSWSDMFRGDGAPFPHPPRILSFSGKNVLTDLSWPHKMAWHGSLVTGERALDVSCDAWH
SGSQHSMGLAGSLRGPQLLEQNVRPCNQRLALLCIEATSQQNIRRKREVKEYTRDFTEFE
YANFLRNITSASV
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atgccatcattagcagaggtgcaatgtgaaacagcttttatgagtttcccagaaggttct
ggtgatgaattatttccaaatgctgatgatttatctataacagatgctgaaggagaagct
agtctctcggaaggaagtggtgctggaattccaccatttgtcatacctccacctccatca
cctgattttccagttggcaggactagcaaaggagataaaggagatcgaggtgctagaggg
ccacctggggaatcgatacgcggaccaccaggtccaccgggaccacctggcccgcaaggc
ccgataggaccagttggcttaccgggtctaccgtatagtggagacgatatcacaggattt
ggtgaagataatccatatccgcttgggtcaccgactggacagtgttcatgtaatattaca
agtatacgtggccctcctgggccacctggtgctgatgggccagtaggtattcctggaatg
acaggtttacctggtccaggtggagaaagaggggcacctggtccgcgtggagagaaagga
gataggggtgatactggaaatcggggtcctgaaggtcagcaaggccaaaaaggtgaacca
ggaagagatggtatgccaggcattgcaggaccaccaggtccacctggtccaacaacacat
ttggatttcacgagttttgatcctagttggaagccacgcactattttcaaggatactata
acggggccagctgctcgcccagggcctccggggcccaaaggagatgttggatctcaagga
cctcaaggtaaacaaggtccaagaggtgaacctggatctaagggagaacggggagagaca
ggaataaaaggagatagaggggaacggggtcatcatggtgcgcaaggagctcaaggattc
aagggagaacctggagtaccaggtatggatggcatacctggtttgcctggagcaaatggt
cgtccagcagagaagggcgaaaaaggtgaaccaggaaagccaggaccaccaggtacacct
gctgtagcgatggtaggtgctggagacggctatatgatgacagggataggtgaaaaagga
gaaccaggagaaaaaggtgaacctggagtaaaaggagagaaaggagagcgtggagagcag
ggtcaaggaggtctcccaggaatgaatggcgcaccaggctcgtcaggagaaaaaggagaa
ccaggaaaagatggtgaagcaggtccacaaggtttaccaggcttaaaaggtgaacgaggg
ccgcctggacctacttcaattgcaggttccggtactgattttattacaataaagggtgat
aaaggtgatcaaggtaagcgtggtagaagaggaaaggagggtcctatgggacctgttgga
ccacctggcaagcctggaccaccgggagacattggattacccggatggatgaatagtctt
aagggtcgtcctggagtacctggtgctcctggtcccaagggagaaaaaggtgatacagcg
gacattagcttgttaagaactttgaaaggtgataaaggtgatgctggaactcctggtaga
gatggtcatccaggaccagcatttgaaggtccacctggcccaccgggtccaccaggccca
cctggaccacctggtatccctggaatatcaattaccggacctaaaggagaacctggctat
gcaccctcgagatttgcatatggtgaacctaactttggaccaactagatcaggacctaga
agtagtctggaagagttaaaagccataagagaacttgaacaattgaaaaaaagtcaaaag
gaaaccttttctgcgacagtgcattctaaatacgacgagaaaaatccggccaaagtcgtt
ccaggtgcagtcacattccaaacaaatgaagatatgatgcggatgtcacctatgagtccg
gttggtactttggcatatataatagatgaagaagccttgttagttcgtgtaaataatgga
tggcagtacattgcgcttggatctatggttccaattacaactccagcacctccaaccaca
gctgcaccagcaatcatgccaccatttgaagctagtaatttgataaacaatgtaccacaa
cctgtcgatggtccaaattggttcccaaaaatgttacgaatggcggcattaaatgaacca
tatacaggtgatatgcatggtgtgcatggtgctgatttagcgtgctaccgacaagcacga
cgtgcaggattacatggaactttccgagcatttttgtcatcacgtgttcagaatattgat
tcaattgttagtttggctgatcgagatttgcctgttgttaatttacgtggtgatgtttta
tttaattcatggtcagatatgtttagaggagatggggcaccatttccgcatccacctaga
atactatcatttagtgggaaaaatgtattaactgatttgtcatggcctcataaaatggca
tggcatggatcccttgtaacaggcgaacgagcattagatgtatcatgtgatgcctggcat
tcaggatcacaacattccatgggcttagcaggatcattacgaggcccacaattattagaa
cagaatgtacgaccgtgtaatcaacggcttgctttattgtgtattgaagcaactagtcaa
caaaatattagaagaaaaagagaagttaaagagtatacgagagattttacagaatttgaa
tatgccaattttctaagaaatatcacttccgcttctgtgtaa
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