Chrysoperla carnea: 123300045
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Entry
123300045 CDS
T09255
Name
(RefSeq) general transcription factor IIH subunit 4
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
ccrn
Chrysoperla carnea
Pathway
ccrn03022
Basal transcription factors
ccrn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccrn00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
123300045
09124 Replication and repair
03420 Nucleotide excision repair
123300045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccrn03021
]
123300045
03400 DNA repair and recombination proteins [BR:
ccrn03400
]
123300045
Transcription machinery [BR:
ccrn03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
123300045
DNA repair and recombination proteins [BR:
ccrn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
123300045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
123300045
NCBI-ProteinID:
XP_044738448
LinkDB
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Position
5:complement(34399395..34408466)
Genome browser
AA seq
479 aa
AA seq
DB search
MADNAKNNKNSVANNLTLQPANLQCKNLHEYLKTRPAEVLEKLYNHPAICLAVYRELPEL
ARQYVIRILFVEQPVPQAVVASWGSQAFSKEHVRVSTVLSELNVWQEAAIPGGLLGWILS
STFKRNLKIALLGGGKPWSMSSQLETDSKARDVSFLDSYSMERWECVLHYMVGSQQQEGI
SADAVRILLHAGLMKRDDDGSPVITRQGFQFLLLDTQAQVWHFILQYLDTVEQRGLDLAD
CLTFLFQLSFSTLGKDYSTEGMSNSLLVFLQHLREFGLVYQRKRKAGRFYPTRLALNITV
SHDKIPPAILDDNAHKGYIIVETNYRVYAYTDSNLQVALIGLFTELMYRFPNVVVGVLTR
ESIRLALRGGITAEQIVGYLRQHAHPQMLAAGGEASSALPPTVVDQIKLWENERNRLTYT
DGVLYSQFLSQADFVVLRDYAQQLNVLIWENEKTRTMVVTKNGHDDVKKFWKRYSKSGN
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaatgccaaaaataataaaaattccgtagcaaataatttaacgttacaacca
gctaatctacaatgtaaaaatttacatgaatatttgaaaacacgtcctgccgaagtttta
gaaaagctttataatcatcctgctatatgtttagctgtatatagagagttaccggaatta
gctcgccaatatgtaattcgaatattgtttgttgaacaaccagttccacaagccgttgta
gcatcatggggctcacaagctttttccaaagaacatgtacgcgtaagcacagtattatca
gagttaaatgtgtggcaagaagctgctataccgggcggcttattaggttggatacttagt
agtacatttaaacgaaatttaaaaattgccttattgggaggaggtaaaccatggagtatg
tcttctcaattagaaacagatagtaaagcacgtgatgtgtcatttcttgattcctattca
atggaaagatgggaatgtgtattacattacatggttggtagtcagcaacaagaaggaatt
tctgcagatgctgtacgaattcttttgcatgctggcttaatgaaacgtgatgatgatgga
agtccagtgataacaagacaaggtttccaatttttactattagatactcaggcacaagta
tggcattttatactccaatatttagatactgttgaacaacgcgggcttgatttagcagat
tgtcttacatttttatttcaattaagcttcagtacgttgggtaaagattatagtacagag
ggtatgagtaatagtttattagtttttttacaacatcttagagaatttggactcgtttat
caaagaaagcgaaaagctggtcgtttttatccaactcgtttagcattgaatataactgta
agccacgataaaatacctccggctatattagatgataatgctcataaagggtatatcata
gtagaaacaaattaccgtgtgtatgcgtacacagattcaaatttacaggttgcgttgatt
ggattatttacagagctaatgtatagatttcctaacgtggttgtgggtgtattaacgcga
gaatcaattagactcgcacttcgtggaggtataactgctgaacaaattgttggctattta
cgtcagcatgctcatcctcaaatgttagctgccggtggtgaagcctcttctgcgttgcct
cctactgttgtcgatcaaatcaaactttgggagaatgaacgtaatagattaacgtataca
gatggcgttttatacagtcaatttctttcacaggctgattttgtggtacttcgagattat
gcgcagcaattaaatgttttaatatgggaaaatgaaaaaacaagaactatggtagttaca
aaaaatggacacgatgatgtcaaaaagttttggaaacggtattcaaaatctggaaattga
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