Chrysoperla carnea: 123300489
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Entry
123300489 CDS
T09255
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ccrn
Chrysoperla carnea
Pathway
ccrn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccrn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123300489
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccrn03019
]
123300489
03012 Translation factors [BR:
ccrn03012
]
123300489
Enzymes [BR:
ccrn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123300489
Messenger RNA biogenesis [BR:
ccrn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
123300489
Translation factors [BR:
ccrn03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
123300489
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
DEAD
Helicase_C
HA2_C
HA2_N
AAA_22
AAA_19
nSTAND3
ATPase
ResIII
NPHP3_N
TsaE
T2SSE
Sigma54_activat
ATPase_2
Motif
Other DBs
NCBI-GeneID:
123300489
NCBI-ProteinID:
XP_044739007
LinkDB
All DBs
Position
5:9726697..9731146
Genome browser
AA seq
915 aa
AA seq
DB search
MSFHNRNTDRRREFKNKRKPWGNNRDKFNFSESQSSLQSNDGDSFHGESSNSQRNSHRHP
PGLKGKEIGLFYARRNKKAREAEDHATRIKISDKIQKEINTLLKDVQFPDDFQSNNYDQI
NDSQFKRLFLQTISTTFDEKLENVTLSEYLERDEQLDDVLKNEFISKIDSEDPKYQELLN
FRKQLPAYKCRNEILQLLDKNQVILISGETGCGKTTQVPQFILEDAIMKGNGSVCKIICT
QPTRISTISVAERVATEMKEKVGTGSAGYSIRLEKKHGRDKGSILFCTTGVILQQIQGNP
TLQGISHLIMDEIHERDIQCDILLTLLKKVIKKRSDLKIILMSATLNAQSFSKYFNNCPG
INIPGFTYPVTEYFLEDVLELTQFEFQESNKKVKPWMTHARKNQDSEENVFAHFIEPHVR
QLQAEGKYSAKTLNNLKNVNSEKLSYEHIVELIKYIVLNKPVGAILVFLPGISDITGVHK
LLQNNPCISQSDIVIPLHSKLPTVNQKLIFERPPPGIRKIILATNIAETSITIDDVIYVI
DPGKIKLKKYDVQNDIETLKSEWVALANANQRRGRAGRVQPGHCYHLYSKARHMSLISYQ
LPEILRIRLDEIILQLKFLQVGKIEPFLSLFMDTPNQNSIRISLNLLKRLNALDDDENLT
PLGYHLAKLPTDPRSGKMILLGAMFSCLDPILSIAASLAYKDAFELPYDKEKIFMERKNE
LSNDTYSDHLVLAEAFRGWEQCPINQQRNYCYNYFLNNRTLILLRDMKREFAQMLHEMKF
LPSSNPKDTRFNYNSCNDSLLKAIICASLYPNVAKIRSCKVVRNQSIVRIHTQEDGKVCL
FPSSINSVQARFPSPYLVYHVKLKSSAIFLHDTTMVHPFPLLFFCDKIHTRQDENCVILK
ISDLMQFKCNDNEAE
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atgtcattccacaatcgaaatactgatagacgtagagaatttaaaaataaacgaaagcca
tggggtaacaatcgtgataaattcaattttagtgaatcgcaatcgtctttacaatcaaat
gatggggatagttttcacggagaatcgtcaaattcacaacgaaattcacacagacatcct
ccgggtttaaaggggaaagaaattggattgttctatgcacgaagaaataagaaagcgcga
gaggccgaagatcatgcgacgcggatcaaaatatcggataaaatacaaaaagaaattaat
actttattgaaagatgtacaatttccagacgattttcaaagtaataattacgatcaaatt
aatgattcacaattcaaacgattattcttacaaacaatatcaacaacattcgatgaaaaa
ttggaaaacgtgacgctttccgaatatttagaacgtgatgaacaactcgatgatgtttta
aaaaatgaatttatatcgaaaattgactcagaggatccaaaatatcaagaattattgaat
tttagaaaacagttaccggcgtataagtgtaggaacgaaattttacaattattagataaa
aatcaagttatattaattagtggtgaaacgggttgtggtaaaacgacccaagtaccacaa
tttatactcgaagatgctattatgaaaggaaatggatcagtatgtaaaattatttgtaca
caaccgactcgtattagtacaatttcagttgctgaacgagttgctaccgaaatgaaagaa
aaagttggtactggatctgcaggatattcaatacgattagaaaagaaacatggtcgtgat
aaaggttccattttattttgtacaacgggtgttattctacaacaaattcaaggcaatccc
acattacagggtatttctcatttaataatggatgaaattcatgaacgtgatattcaatgt
gatatacttttaacattactgaaaaaagtgataaaaaaacgttctgatttaaaaataatt
ttaatgagtgccacattaaatgcacaaagtttttcaaaatattttaacaattgtcccggt
ataaatataccaggttttacgtatcccgttacggaatattttctggaagatgtacttgaa
ttaacacaatttgagtttcaagaatccaataaaaaagtaaaaccatggatgacacatgca
aggaaaaatcaagacagtgaagaaaacgtttttgctcattttattgaacctcatgttcga
caattgcaagcggaaggaaaatattcagcgaaaacgttaaataatctgaaaaatgtaaat
tcggagaaactgagttatgagcatattgtggaattaattaaatatatcgtacttaacaaa
ccagtgggagcaattttagtttttttaccgggtatttcagatattacaggggttcataaa
ttattacaaaataatccgtgtatttctcaatccgatattgtaattccattacattctaag
ttaccaactgtcaatcagaaattaatttttgaaagacccccgcctggaatacgaaaaatc
attctagccacgaacattgcagaaacgtcaattacaatcgacgatgttatttatgttatt
gatccggggaagattaaattaaaaaagtatgacgtacaaaatgatattgaaacgttaaaa
tctgaatgggttgctttagcaaatgctaatcaacgccgaggacgtgctggacgggttcaa
ccggggcattgttatcatttatattcaaaagctcgtcatatgtcgttaattagttatcaa
ttacccgaaattttacgtattcgcttagatgaaattattttacagttaaaattccttcaa
gttggaaaaattgaaccgtttttatcactttttatggatacaccaaatcaaaattcaata
cggatttcattgaatttattaaaacgtttaaatgctttagatgatgatgaaaatttaacg
ccattaggttatcatttagcgaaattaccaacagatcctcgaagcggtaaaatgattttg
ctaggagcaatgtttagttgcttagatccgatactatctatagcagcatcgttagcgtat
aaagatgcgtttgaattaccgtatgataaagagaaaatatttatggagcgtaaaaatgag
ttaagtaatgatacgtatagtgatcatttagttttggctgaagcatttcgtggatgggaa
caatgtccaattaatcaacagagaaattattgttataattattttttgaataatcgtaca
ttaatcttgttgagagatatgaaacgagaatttgctcaaatgttacatgaaatgaaattt
ttaccaagttcgaatccaaaagatacaagatttaattataattcatgtaatgatagttta
ttgaaagctattatttgtgcgtctttatatccaaatgttgcgaaaatcagatcttgtaaa
gtagtaagaaatcaatcaattgtaagaattcatactcaagaagatggtaaagtatgttta
tttccttcatcaatcaattcagttcaagcaagatttccatcaccatatttggtatatcat
gtcaaattaaaatcatcagctatttttcttcatgatacaacaatggtacatccgtttcca
ttgttattcttttgtgataaaattcatactagacaggatgaaaattgtgtaattttaaaa
atctcagatttaatgcaattcaagtgtaatgataatgaagctgaa
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