Chrysoperla carnea: 123301480
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Entry
123301480 CDS
T09255
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
ccrn
Chrysoperla carnea
Pathway
ccrn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccrn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
123301480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccrn03400
]
123301480
DNA repair and recombination proteins [BR:
ccrn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
123301480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
Use1
UPF0047
Dynactin_p22
AAA_27
Motif
Other DBs
NCBI-GeneID:
123301480
NCBI-ProteinID:
XP_044740161
LinkDB
All DBs
Position
5:70684428..70748544
Genome browser
AA seq
1007 aa
AA seq
DB search
MSSKKVKRQRIEDDLEESVVEPEKNHNSEDDNEDEEVSGSTRKPKRALGLDVADQNSFLD
FLHSLPEKSRTVRIFSRDDYYTVHENDAIIATEIHKSLVVKTMGSDEKLSKYLVLNAYNF
KSFLRELLLVKQYRVEVYTKESASGNDWTVEYKGSPGNLIQFESILFSEDILVESLIIAI
KIVLQDGGIREIGLACLDQNTATITVCEFNDNELFTDLEALLVQLAPKECLIAKNQTADM
FRIETIMTRNNVLLTKLSEKDFSTDNLISDLNRLIFFEQSQVCDANRLPVMKKMIAPCGI
AALIKYLDLMSVETNFNQFKIVDFNLKEFVHVDGAAISGLNILPPQGREPTELNSILGCF
DACSTSQGHRLLAQWFKQPLRDIDKINERHDIVEAFYKNTDVRNTLHTSYLKSIPDLQAI
VKKIMHKKAKLQDCYRIYQTVQQLRFIVQELMHESNKGVRTVLIEPLQDCVNDMAKYQQM
IEQTIDLDAAGDGKFLIRSDFDETLVDVSEIRIKLEEQMNNVLSDVTHDLGLDQKNVKLE
SCSQYGYCFRVTLQYEQSLRSKTKYEILDVKNNGVRFTNKKLKDINTEYDATVKSHEEQQ
SKVVDDLMSVAATFTSTIVNINSIIALIDVFIGLAQTAANAAKPYVRPQMLAEGSDILYL
KQVRHPCIELNKEFVANDCSFKRQKEIFQVITGANMGGKSTYIRSIGVSVLLAHIGAFVP
CEKATIPIFSAILARIGAHDDENRGHSTFMVEMIETSGTCQAVNENSLVLIDELGRGTST
YEGAGIAWAVAEYLIEKKAFTVFATHFHELTYLADEFDYVVNKHVAVHHGEGQLTFLYEI
RNGACAKSYGLPLAKIIGFPNSIIHHAAQTLTRLDPSVNMDSDMDAAAKRKYIKEGKAYI
QSIIERLQGLDKDKMSTEEYKNIIDEIKQEVKNHSNPFMQAKCKTVENYLEYLNNFKSQN
GREKFRGRMKPPGLHEPVNGTNGVVQENHVVHDELNGIEAEAFDDDF
NT seq
3024 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagtaaaaaagtgaaacgacagagaatagaagatgatttagaagaaagtgttgtt
gaaccagagaaaaatcacaacagcgaagatgacaatgaagatgaagaagtttcagggagt
accagaaagccgaaaagagctttaggtttagatgttgctgatcaaaattcgtttttggac
tttttacacagtttacccgaaaaatcacgaacagttcgaatattttccagagatgattac
tacaccgtacatgaaaatgatgctattattgctaccgaaatacataaatcgttagtggtg
aaaactatgggcagcgatgaaaagctatccaaatatttagtattaaatgcatataatttt
aaatcatttttacgcgaattattactcgtcaagcaatatcgggttgaggtttacacaaaa
gaatctgcaagtggaaatgattggacagtcgaatataaaggatcaccaggaaatttaata
caatttgaatcgattttatttagtgaagatatacttgttgagagtttaatcattgcaata
aaaattgttttacaagatggtggaattcgggaaattggtctggcatgtttagatcaaaat
acagcaacaataacagtatgtgaattcaacgacaatgaattattcaccgatttagaagca
ttactcgttcaattagcaccaaaagaatgtttaattgctaaaaatcaaacagccgatatg
ttccgtattgaaacaataatgacacgtaataatgttttgttaacaaaattaagtgagaaa
gatttttcaacggataatttaataagcgatttaaatcgtttaatattttttgaacaatcg
caagtatgtgatgcaaacagattacctgtcatgaaaaaaatgatagcaccatgtggtatt
gcagctttgatcaaatatttagatttgatgtcagtcgaaactaattttaatcaattcaaa
attgttgattttaatttaaaagaatttgtacacgtagatggtgctgctatttctggctta
aatattttaccaccgcagggtcgtgaaccaactgaattaaatagtattttaggatgtttt
gatgcgtgtagcaccagtcaaggtcatcgtttattagctcaatggtttaaacaaccatta
cgtgatattgataaaataaatgaacgtcacgatattgtagaagctttctataagaataca
gatgtacgcaacacattacatacatcgtacttaaaaagtataccagatctacaagctatt
gtgaagaaaatcatgcataaaaaagcaaaattacaagattgttatcgtatttatcaaaca
gttcaacaattacgtttcattgtacaagagttgatgcatgaatcgaataaaggtgttcgt
acagtcttgattgagccattacaagattgtgtcaacgacatggccaagtatcagcagatg
attgaacaaacaattgatttagatgctgctggagacgggaaatttttaattcgatctgat
tttgatgaaacattagttgatgtatcagaaatacgtataaaattagaagaacaaatgaat
aacgtgttaagcgatgttacacatgatttaggtttggatcaaaaaaatgtgaaattagaa
tcatgttcacaatatggttattgttttcgtgtaacattacaatatgaacaatcgctacgt
tccaaaaccaaatatgaaatattggatgtcaaaaataatggtgtacgttttactaacaaa
aaattaaaggatattaatacagaatatgatgcaactgttaaaagtcatgaagaacaacaa
tcgaaagtagtcgatgatctaatgtccgttgcagccacatttacgagtacaattgttaat
attaattcaattattgcattaattgatgtattcattggtttggctcaaactgcagccaat
gctgcaaagccatatgtacgtccacaaatgttagcagaaggttcagacatattatattta
aaacaagtacgacatccatgcattgaattgaataaagaatttgttgctaatgattgttct
tttaaacgacagaaagaaatatttcaagtaattacaggtgcaaatatgggtggtaaatct
acatatattcgatcaattggtgtgagtgtattattagcacatattggtgcatttgtgcct
tgtgaaaaagcaactataccaatatttagtgcgatcttagcacgtattggcgcacatgat
gatgaaaatcgtggacattcaacatttatggttgaaatgattgaaacatcgggaacatgt
caggctgtcaatgaaaattcattagtactaattgatgaactagggcgtggtacttcaacc
tatgaaggtgctggaatcgcttgggctgttgcagaatacctgatagaaaaaaaagctttt
actgtttttgcaacacattttcatgaattaacatatttagctgatgaatttgattatgtt
gtgaataaacatgtagctgtccatcatggcgaaggccaactaacatttttatatgaaata
cgtaatggagcttgtgctaaaagttatggtttaccacttgctaaaatcattggttttccc
aattcaattattcatcatgctgctcaaactctcacaagattggatccaagtgttaatatg
gattcagatatggatgcagctgctaaaagaaagtatattaaggaaggaaaagcttacata
caatctataatagaaagattgcaaggattagataaggataaaatgtcaacagaagaatat
aaaaatattattgatgaaatcaaacaagaagttaaaaatcactcaaatccttttatgcag
gctaaatgtaaaacagttgaaaattatttggaatatttaaataattttaaatcacaaaat
ggtcgagaaaaatttagaggtcgtatgaaaccacctggattacatgaacctgtgaatgga
acgaacggagttgttcaggaaaatcatgttgtacatgatgaactgaatggtattgaagct
gaagcattcgatgatgatttttaa
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