Chrysoperla carnea: 123304917
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Entry
123304917 CDS
T09255
Name
(RefSeq) ATP-dependent RNA helicase WM6
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ccrn
Chrysoperla carnea
Pathway
ccrn03013
Nucleocytoplasmic transport
ccrn03015
mRNA surveillance pathway
ccrn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccrn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123304917
09122 Translation
03013 Nucleocytoplasmic transport
123304917
03015 mRNA surveillance pathway
123304917
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccrn03019
]
123304917
03041 Spliceosome [BR:
ccrn03041
]
123304917
Enzymes [BR:
ccrn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123304917
Messenger RNA biogenesis [BR:
ccrn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
123304917
Spliceosome [BR:
ccrn03041
]
Complex C
Other components
EJC/TREX
123304917
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
123304917
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
123304917
NCBI-ProteinID:
XP_044742404
LinkDB
All DBs
Position
1:complement(102453817..102462834)
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AA seq
426 aa
AA seq
DB search
MSADNDDLLDYEDEEQPEQTVTDAVVDGQTKKEVKGTYVSIHSSGFRDFLLKPEILRAIS
DCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPAENHVYVLVMCH
TRELAFQISKEYERFTKYLNHIKVGVFFGGLPIQKDEEVLKNSCPHIVVGTPGRILALVR
AKKLNLKHLKHFILDECDKMLELLDMRRDVQEIYRNTPHDKQVMMFSATLSKDIRPVCKK
FMQDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCM
ALSQLLTEQNFPAIGIHRGMNQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFN
YDMPEDSDTYLHRVARAGRFGTKGLAITLVSEEGDAKILNEVQDRFDVNITELPDEIDLS
SYIEGR
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccgataatgatgatcttttggattatgaagatgaggaacaaccagagcagact
gttactgatgccgtagtagacggccaaaccaaaaaagaagttaaaggtacatatgtatct
attcacagttccggctttcgtgatttcttattgaaaccagaaattctgcgtgctatttct
gattgtggttttgaacatccttcggaagttcaacatgaatgcattcctcaggctgtgctt
ggcatggatatcctatgtcaagcaaaatctggtatgggaaagacagctgtatttgtactt
gccacattacagcagttagaaccagcagagaatcatgtatatgtgttggttatgtgtcat
acacgtgaacttgcattccaaattagtaaagaatatgaacgttttacaaaatatttgaat
catattaaagttggtgtattttttggcggtctaccaatacaaaaggatgaagaagtactt
aagaatagttgtccacatattgttgttggaacaccaggaagaatattggcacttgtacgt
gctaaaaaattgaatttgaaacatttgaagcatttcattttggatgaatgtgataaaatg
cttgaattattagatatgagacgtgatgtacaagaaatttatcgtaacacaccacacgac
aaacaagtaatgatgttctcggctacgctcagcaaagatattcgtcctgtttgcaagaaa
ttcatgcaagatcccatggaagtttatgtcgatgatgaagccaaattaacacttcacgga
ttacaacaacattatgtcaaattaaaggaaaatgaaaagaataaaaaattatttgaactt
ttagacgtattagaattcaatcaggtcgtaatattcgtaaaatcagtacaacgatgtatg
gcattatcacaattattaacagaacaaaatttccctgcaattggtatacatcgtggtatg
aatcaagaagaacgtttatcacgctaccaacaatttaaagactttcaaaaacgtatatta
gttgcaacaaatttatttggacgtggtatggatattgaacgtgtaaatattgtatttaac
tatgatatgccagaagattcagacacgtacttacatcgtgttgcacgagcaggtcgtttt
ggtaccaaaggtttagctattacgttggttagtgaggaaggtgatgcgaaaattttaaat
gaagttcaagatcgttttgacgttaatataactgaattaccagatgaaattgatttatca
tcttacattgaaggacgttaa
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