Chondromyces crocatus: CMC5_007680
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Entry
CMC5_007680 CDS
T04010
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ccro
Chondromyces crocatus
Pathway
ccro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CMC5_007680 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccro03021
]
CMC5_007680 (rho)
03019 Messenger RNA biogenesis [BR:
ccro03019
]
CMC5_007680 (rho)
Transcription machinery [BR:
ccro03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CMC5_007680 (rho)
Messenger RNA biogenesis [BR:
ccro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CMC5_007680 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
Spore_III_AA
AAA_22
S1CSD-TOTE-2
AAA_25
ATPase_2
AAA_16
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
AKT36648
UniProt:
A0A0K1E7W2
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All DBs
Position
974969..976216
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AA seq
415 aa
AA seq
DB search
MHLKELKQKSMADLVQMAKSLNIEGAAGLRKQEVIFALLQAHAAKDQPVYGEGVLECLPD
GFGFLRAPDYNYLPGPDDIYISPSQIRRFNLRTGDSVSGSIRPPKEREAYFALLKVDKIN
GEAPEVARDKILFDNLTPLYPQQKFELEHGPKSFSTRIIDMLCPIGKGQRCLIVSPPRAG
KTVLLQHLANAISSNHPDTTLIVLLIDERPEEVTDMQRTVKGEVISSTFDEPPTRHVQVA
EMVIEKAKRLVEHKHDVVILLDSITRLARAYNTVVPPSGKILSGGVDSNALHKPKRFFGA
ARNVEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSEIHLDRKLMEKRIFPCLDINKS
ATRKEELLLPEWILQRVWLLRQLLHPLNVIDSMEFLLDKVSRTETNQEFLESMNQ
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgcacctcaaggaactgaagcagaagtcgatggccgatctggtgcagatggccaagtcg
ctgaacatcgaaggcgctgccggtttgcgcaagcaggaggtgatattcgccctgcttcag
gcacacgcggcgaaagatcagcctgtctatggtgaaggtgttctggagtgccttccagac
ggcttcggattcctgcgcgcacctgattacaactacctgccgggccctgacgacatctac
atctcgccatcgcagatccggcgcttcaatctccgcactggcgatagtgtaagtggttcg
atccggccaccgaaggagagggaagcgtattttgcgctgctgaaggtcgacaagatcaat
ggcgaagcgccggaggtcgcgagggacaagatccttttcgacaacctgacgcctctctat
cctcagcagaagttcgagctggagcacgggccgaagtcgttctccacgcgcatcatcgac
atgctttgccccatcggcaaaggacagcgatgcttgatcgtctctcccccgcgagcaggc
aagacggtgctgcttcagcaccttgccaatgcaatctcttcgaatcatccggatacgacg
ctcattgtgttgctcatcgacgagcgcccggaagaagtcaccgacatgcagcgtacggtg
aaaggagaggtcatcagctccaccttcgacgagccccccacgcgtcacgtccaggtggcg
gagatggtcatcgagaaggccaagcgcttggtggagcacaagcacgacgtggtgatcctg
ctcgactcgatcaccaggttggcccgcgcctacaacacggtggtccccccgagcggcaag
atcctctccggcggtgtcgactccaatgccctccacaagcccaagcgattctttggtgcc
gcacggaacgtggaggagggggggtccctcaccattatcgccaccgccctggtcgacacg
gggtcccgcatggacgaggtgatcttcgaggagttcaaggggaccggcaacagcgagatc
catctcgaccgtaagttgatggagaagaggatcttcccctgcctcgacatcaacaagagc
gcgacccgcaaggaagagctcttgctgcccgagtggatcctgcagcgcgtctggctactt
cggcagcttctgcaccccctcaacgtcatcgactccatggaattcttgctggacaaggtc
agccgcacggagaccaatcaagagttcctcgagagcatgaaccagtaa
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