Chondromyces crocatus: CMC5_015490
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Entry
CMC5_015490 CDS
T04010
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ccro
Chondromyces crocatus
Pathway
ccro03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ccro00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CMC5_015490 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccro03021
]
CMC5_015490 (rpoC)
03400 DNA repair and recombination proteins [BR:
ccro03400
]
CMC5_015490 (rpoC)
Enzymes [BR:
ccro01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CMC5_015490 (rpoC)
Transcription machinery [BR:
ccro03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CMC5_015490 (rpoC)
DNA repair and recombination proteins [BR:
ccro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CMC5_015490 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AKT37408
UniProt:
A0A0K1E9Z6
LinkDB
All DBs
Position
2032139..2036422
Genome browser
AA seq
1427 aa
AA seq
DB search
MRDIFSFFEKPKDPLSFSAIRISLASPEKIREWSHGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECNCGKYKRMKHRGIVCEKCGVEVIQSKVRRERLGHISLATPVAHIWFLKSL
PSRIGNMLDITLKDLEKVLYCEAYIVIDPKDTPLQRGDLLSEERYMQIIEEYGDDRFAAG
MGGEAVLEMLKQVDVHALAELLRTEMRSATSEAKRKKLAKRLKVVEAFRESGNRPEWMML
TVIPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELNAPEIIIRNERRML
QEAVDALFDNGRRGKTITGPNKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
TLRLHQCGLPKKMALELFKPFIYNKLEERGYVNTIKSAKKMVEKERPEVWDILEEVISEH
PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQME
ARVLMMSTNNILSPASGKPIINPTQDIVLGLYYATRERKFAKGAFRAGSLTVGEDGGTSG
YLRGVYASKEEVRMAYDHGAVTLHAGIRVRVPIIDDDGKPVLDENGHIKRTVVQTTVGRV
LISEVLPKKLPFEYVNKVLDKKALSQLIDVCYRIHRNKETVLLADRLRTLGFDHATKAGV
SICMDHMVIPPAKKVLLGEAQKEVERVIEQYQEGLITDGERYNKIVDIWASIADQVTSEM
MGGIRNETVVDPETGEEQQEQSFNPIYIMADSGARGSTQQIRQLAAMRGLMAKPSGEIIE
TPITANFREGLSVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDAVISDFDCGT
LDGIRVAKLEEAGEVIQPLGERILGRVTLDDVVDPLTGEVLVRANSELDESAVRIIEDAG
IEEVAIRSVLTCQLRRGVCALCYGRDLARGYRVNIGESVGIIAAQSIGEPGTQLTMRTFH
IGGTAARGKIEASYLEARTEGTVRLRRAVIQKKKDGTMVVMNRHGEIIVVDETGREREHN
RLVYGAILKLADGDRVKPGDLLAEWDQFATPILTEVSGIVKFGDLIEGVSVQERVDEVTG
LSRKVVIESKATDVRPRITLKDQVSGDTLKLPNSTLDARYLLPVGAHIVAQEGDLIEAGE
VIAKMPRDTTKVQDITGGLPRVAELFEARKPKDHAIITEIDGEVNFGKDTKGKRKVIITP
MGPDSAMLSDQAREYLIPKGKHIQVQPGDRVRAGDPLMDGPPNPHDILRVKGEKELAAWL
VNEIQQVYRLQGVTINDKHIEVIVRQMLRRVRVREVGDTNFLVDEQVEKHLFERENERVL
ERGGKPAIAEPLLLGITKASLSTESFISASSFQETTKVLTEAAINGKTDDLRGLKENVIM
GRLIPAGTGLPAYKRLQIVIDGEAQLPPAAPAVRPRPEETLSAVNEE
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgacatcttcagcttcttcgagaagcccaaggacccgctgtctttcagcgcgatt
cgtatatcgctcgcaagtcctgagaagatccgcgagtggtctcacggcgaggtgaagaag
cccgagaccatcaactacaggaccttcaagcccgagcgcgacggcctcttctgcgcgaag
atcttcgggccggtgaaggactacgagtgcaactgcggcaagtacaagcgcatgaagcac
cgtgggatcgtgtgcgagaagtgcggcgtcgaggtcatccagtcgaaggtgcggcgcgag
cggctcggccacatctcgctcgcgacgcccgtcgcccatatctggttcctcaagagcttg
ccgtcgcgtatcggcaatatgctcgatatcaccttgaaggatctcgagaaggttctctat
tgcgaggcctatatcgtcatcgatcccaaggacaccccgctgcagcggggcgatctgctc
agcgaagagcgctacatgcagatcatcgaggagtatggcgatgacaggttcgctgccgga
atgggcggtgaggcggtcctcgagatgctcaagcaggtggacgtccatgcgctggcggag
ctgctgcgcaccgagatgcggagcgcgaccagcgaggccaagcgaaagaagctcgccaag
cgtctgaaggtcgtcgaggcattccgcgagagcgggaatcggccggagtggatgatgctc
acggtgattcccgtgctgccgcccgatctccgccccctcgtaccgctggatggtgggcgc
ttcgcgacgagcgatctcaatgatctctatcgccgcgtcatcaatcgtaacaaccgattg
aagcgtcttcttgagctgaatgctcctgagatcatcatccggaacgagcgtcgcatgctg
caggaggcggtcgacgcgctgttcgacaatggccgccgtggcaagaccatcaccgggccc
aacaagcgaccgctcaagtcgctgtcggacatgctgaaggggaagcagggccgcttccgc
cagaatctgctcgggaagcgtgtcgattactccggccgttccgtcatcgtggtcggaccc
acgctgcgtctccaccagtgcggtcttcccaagaagatggccctcgagctcttcaagccg
ttcatctacaacaagctggaagagcgcgggtacgtcaataccatcaagagtgcgaagaag
atggtcgagaaggagcgtcccgaggtctgggacatcctcgaagaggtcatcagcgagcac
cccgtgctgctcaatcgcgcgccgacgctgcaccgactgggtattcaggcattcgagccg
gtcctcatcgaaggaaaggccattcagcttcaccctctggtctgcgctgcgttcaacgca
gacttcgacggcgatcagatggcggtccatgtgccgctgtcgattgaagcgcagatggaa
gcgcgcgtgctcatgatgagcacgaacaacatcctgtctcccgcgagcgggaagccgatc
atcaacccgactcaggatatcgtgctcgggttgtattacgcgacgcgtgagcggaagttc
gccaagggcgcgttccgcgctggctcgctgacggtcggcgaggacgggggcacctcgggt
tacctgcgaggggtctatgcctcgaaggaagaggtgcggatggcctatgaccatggggcg
gtcacgctccatgcgggcattcgcgtccgggtcccgatcatcgacgacgatggcaagccg
gtcctggacgagaatgggcacatcaagcgtaccgtcgtgcagaccacggtcgggcgcgtg
ctcatctcggaggttctgccgaagaagctgcctttcgagtacgtgaacaaggtcctcgac
aagaaggcgctgtcccagctgatcgacgtttgctaccgcatccatcgaaacaaggagacg
gtgctgcttgcagaccgtctgcgtacgttgggcttcgatcacgccaccaaggcgggcgtc
tcgatctgcatggatcacatggtgatcccgcccgccaagaaggtcctcctgggcgaagct
cagaaggaagtggaacgcgtcatcgagcagtatcaagagggcttgatcaccgacggcgag
cgctacaacaagatcgtcgatatctgggcgagcattgccgaccaggtcaccagcgagatg
atgggcgggatccggaacgagaccgtggtcgatcccgaaacgggcgaggagcagcaagag
cagagcttcaaccccatctacatcatggccgacagcggagcgcgcggttcgacgcagcag
atccggcagctggccgcaatgcgcgggctgatggcgaagccctctggcgagatcatcgag
acgccaatcaccgcgaatttccgtgaaggactgagcgtgctccagtacttcatctcgacc
catggcgctcggaagggtctggcggatacggcgctgaagacggccaactccgggtacttg
acccggcgcctcgtcgacgtcgcccaggatgcggtcatctccgacttcgattgcgggaca
ctggatggcatccgcgtggcgaagctggaggaggccggtgaggtcatccagccgctcggc
gagcgcatcctcggccgcgtgacgctcgatgatgtcgtcgacccgctgaccggcgaggtc
ctggttcgggcgaactcggaactcgacgaatcggccgtgaggatcatcgaggacgccggt
atcgaggaggtcgcaatccgctccgtgctgacttgccagctacggcggggagtctgcgcg
ctttgctacggacgcgacctggcacgcggttaccgcgtgaacatcggtgagtcggtgggc
atcatcgccgctcagtcgatcggcgagccgggcactcagctcaccatgcgcacgttccac
atcggtggaacggccgcgcgcgggaagatcgaggccagctacctcgaggctcggaccgaa
gggaccgttcggctacgtcgcgccgtcattcagaagaagaaagacggcaccatggtggtg
atgaaccgccacggcgagatcatcgtggtcgacgagacgggccgtgagcgagagcataat
cgcctcgtttacggtgcaatcctcaagctcgccgacggggaccgggtgaagcctggtgac
ctgctcgccgagtgggatcagttcgcgacgcccatcctcacggaggtctccgggatcgtg
aagttcggcgatctcatcgagggtgtcagcgttcaagagcgtgtcgacgaggtgaccggc
ctctcgcgaaaggtcgtcatcgagtcgaaggcgacggacgttcgtcctcgcatcaccctc
aaggaccaggtgtccggggatacgctgaagctgccgaacagcacgctcgatgcacgctac
ctgttgcccgtcggtgcgcacatcgttgctcaggagggtgacctcatcgaggcaggcgag
gtcatcgcaaagatgccgcgcgacacgacgaaggtgcaggacatcaccggcggcctcccg
cgcgtcgcggagctcttcgaggcgcggaagccgaaggatcacgcgatcatcaccgagatc
gacggcgaggtgaacttcggcaaggacaccaagggcaagcggaaggtcatcatcacgccg
atgggtcctgatagcgcgatgctcagcgatcaggctcgtgagtatctcatcccgaagggg
aagcacattcaggtccagcctggcgaccgtgttcgtgcaggtgatcccctgatggatggg
ccgcccaatccgcatgacattctgcgcgtcaagggtgagaaagagctggccgcatggctg
gtgaacgagatccagcaggtttatcgcctgcagggcgtgaccatcaacgacaagcacatc
gaagtgattgtgcggcagatgttgcgtcgggttcgcgtgcgcgaagtgggtgacaccaac
ttcctcgtggatgagcaggtggagaagcacctcttcgagcgcgagaacgagcgcgtcctg
gagcgcggaggcaagccggcgatcgccgagccgcttctgctcggtattacgaaggcgagc
ctctcgacggagtccttcatcagcgcctcgtcgttccaggagacgacgaaggtcctgacg
gaagccgcgatcaacgggaagacggacgacctgcgcggcttgaaggagaacgtcatcatg
ggacgtctcatcccggccgggaccggactcccggcatacaagcgtctccagatcgtcatt
gatggcgaggcgcagctcccgccggcggctccagccgttcggccccgccccgaagagacg
ctctcggcggtgaacgaagagtag
DBGET
integrated database retrieval system
