Chondromyces crocatus: CMC5_036460
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Entry
CMC5_036460 CDS
T04010
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ccro
Chondromyces crocatus
Pathway
ccro03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CMC5_036460 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccro03400
]
CMC5_036460 (mfd)
Enzymes [BR:
ccro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CMC5_036460 (mfd)
DNA repair and recombination proteins [BR:
ccro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CMC5_036460 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
AKT39499
UniProt:
A0A0K1EF70
LinkDB
All DBs
Position
complement(4842461..4846219)
Genome browser
AA seq
1252 aa
AA seq
DB search
MPVDQDPRTDRTDQGTLTVSLGELAGELELPPDSTPASTREPLPSLDLPADRAVVTTRDL
AGLVAAARSTSLFHAAGAAGAAAGLLVRRLAMSSRRRVVAITHDVDAARALAADVSFLLG
ERDASEAEARGEDAGKVLLFVPNEASPYADVNPDRRGAEARLSTLFHLAMDLPWSVLVCP
IAALARKVLPRDEVVDHAELIIAEQELDRGALLARLGASGYVRSPLVEDPGTFAVRGALL
DVWPPGAERPVRVEFYGDLIMSIKTFEPEDQRTLGEVKEAWLPPAREAILTSANVERARE
RVRALCDAVDMPSSKARVLVEDVTSGRTFFGSEGYLPAYVDLAPFADYLPEDVTVVLEDP
PALTSALRDELGRAAADASEKSRSPHFPLSAFYEAERGVARWLGSRVGVALHRTGVAGGV
PGEDSLERFEIAPEETPSLATQDQSDMERAIKAARASRGKHGALDPLVRRVSAWQEAGLK
VIIAARAQTQVERLVTLLRHRDLPVRARLGAFDPGLLDGGSTEARDTALVVTGTLARGVV
APAEGLALVTEEEIFGARAHRRAARAASSSTKPARAFLEDLRGLDVGDFVVHVEHGIGRY
LGLVHKHVGALTIDLIAVEYAGGDKLYLPVYRLNQIQKFSGGEGTPKVDRLGGQTFAKTK
ARVEKQLRKMADELLRLYAERRAAHAEGLPPADDEYQAFEATFPFDETADQARAIAEVSA
DLEAPRPMDRLVCGDVGFGKTEVAIRAAFRAALAGKQVAVLCPTTVLAQQHYLTFKSRMG
SYPIELRAMSRFQTKSEQDDTMRRLRDGTVDIVIGTHRLLSKDIHFKRLGLLIVDEEQRF
GVTHKERIKALKTNVHVLTLTATPIPRTLQMAVSGLRDMSIITTPPVDRRAIRTIVTRFD
EAVLREAVTREIERGGQVFYVYNRVEGLYERAARLAELMPSARVVVAHGQMGEHALEQAM
LDFVEGRYDVLCATAIIESGLDIPRANTMIIDRADMFGLSQLYQLRGRVGRSRERAYCYL
VVPPPNAMTDESRARIEALERHTELGSGFQIASLDLELRGGGDLLGAEQSGTVASVGFEL
FCQMLDEAVHELQGHPVVHEVDPELSFDADALLPEDYISDVGVRLTLYKRFAGASSIDEV
QELATEMEDRFGPPPVEGRRFVHLMRLKTELRKLRALGCEATSKGVTLHLREDTPLDTTK
IMQLMQQKGSPYKVTPDMRLSRRTRESEMFASGLEAADKLLSDLAGCLKDGV
NT seq
3759 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtcgaccaggatccccgcacggaccgcacggatcaggggacgctcaccgtttca
ctgggggagctggcaggggagctggagctgcctccggacagcacgcctgcttccacccgg
gaaccactcccttcgctcgacctgccagcggacagggcggtggtgacgacccgcgatctg
gccggtctcgtcgcggcagcgcgttcgacgtcgctcttccacgcggccggggcggccggg
gccgcggcgggtctgctggtacgacggctggcgatgtccagccggcggcgggtggtggcg
atcacccatgatgtcgacgcggcacgcgcactcgccgccgacgtctccttcctgctgggg
gagcgggacgcgagcgaagccgaggcgcgtggggaggacgccgggaaggtgctgctgttc
gtaccgaacgaagcgagcccttacgcggacgtgaatcccgaccggcgaggcgcggaggcc
cgcctctccaccctgtttcacctggcaatggatctgccgtggtccgtgctggtctgcccc
atcgcggcactcgctcgcaaggtgctgccgcgggatgaggtggtcgatcacgccgagctg
atcatcgccgagcaggagctggatcgaggtgcgctgctcgcgcggctgggggcgtccggg
tacgtgaggagcccgctggtcgaagacccggggacgttcgcggtgaggggcgcgctgctc
gatgtgtggccgcctggcgcggagcggccggtgcgggtggagttctatggcgacctgatc
atgtcgatcaagacgttcgagccggaggatcagcgcacgctcggcgaggtgaaggaggcc
tggttgccccccgcacgcgaggcgatcctgacgtcggccaatgtggagcgcgcacgggag
cgggtgcgtgcactgtgcgatgcggtcgacatgccgtcgtccaaggcccgggtcctcgtg
gaagacgtgacgagtgggcggaccttcttcggttccgaggggtacctgccggcctatgtg
gatctggcgcccttcgcggattacctgcccgaggatgtgacggtggtgctggaagatccg
ccggccctcacctcggcgttgcgcgacgagctgggccgcgccgccgcggatgccagcgag
aagtcgcgctcgcctcacttcccgctcagcgcgttctatgaggcggagcgcggtgtggcc
aggtggctgggatcgcgcgtgggcgtggcgctgcatcggaccggcgtggcagggggagtt
ccgggggaagactcgctggagcgcttcgaaatcgcgcccgaggagactccctcgctcgcc
acgcaggaccagtccgatatggagcgtgcgatcaaggcggcgagagcgtcgcgcggcaag
cacggagcactggatccgctggtgcgacgggtgtcggcctggcaggaggcggggctcaag
gtgatcatcgcggcccgcgcgcagacacaggtggaacggctggtgacgctgctccggcac
cgggatctgccggtgcgcgcacggctgggggcgttcgatccgggcctgctcgacgggggc
tcgaccgaggcgcgcgatacggcgctggtggtgacgggtacgctggcgcgcggggtggtc
gcgccggcagaggggctcgcgctggtcacggaggaggaaatcttcggcgcgcgagcccac
cggcgcgcggcccgtgcggccagctcgtcgacgaagccggcgcgggcgttcctggaggac
ctgcgcgggctcgacgtgggcgacttcgtcgtgcacgtcgagcatgggatcgggcgctat
ctcgggctggttcacaagcatgtcggggcgctgaccatcgacctgatcgcggtcgagtat
gcggggggtgacaagctgtacctgcccgtctaccggctgaaccagatccagaaattctcg
ggtggtgagggcacgccgaaggtcgatcggctcggtgggcagacgttcgccaagacgaag
gcgcgcgtggagaagcagctccggaagatggccgacgagctgctgcggctctacgccgag
cgccgcgcggcgcacgcggaggggctcccgccggcggacgacgagtaccaggcgttcgag
gctacgttcccgttcgacgagacggcggatcaggcgcgggccatcgccgaggtgagcgcc
gatctggaggcgccgcgcccgatggatcggctggtctgcggcgacgtgggcttcggcaag
accgaggtggcgatccgggcggcgttccgcgcggcgctcgcggggaaacaggtggcggta
ctctgcccgaccacggtcctcgcacagcagcactacctcaccttcaagtcccggatgggc
tcttaccccatcgagctgcgcgccatgagccggttccagacgaagtcggagcaggacgac
accatgcgacggcttcgcgacggcacagtcgacatcgtgatcggaactcaccgcctcctc
tcgaaggacatccacttcaagcggctcggtctgctgatcgtggacgaagagcagcgcttc
ggggtgacacacaaggagcggatcaaggcgctcaagaccaacgtccatgtgctcacgctg
acggccacccccatcccgcgcacactccagatggccgtgtctggtctccgggacatgtcg
atcatcacgacgccgccagtggaccggcgagccatccggacgatcgtgacccgcttcgac
gaggccgtgctccgggaggccgtgacgcgcgagatcgagcgcggggggcaggtcttctac
gtctacaaccgggtcgagggcctgtacgaacgggcagcgcgactcgcggaactcatgccc
tccgcgcgggtggtcgtggcgcacgggcagatgggcgagcacgcgctcgagcaggcgatg
ctcgatttcgtggagggtcggtacgacgtgctgtgtgccacggcgatcatcgagagcggg
ctggacatccccagggcgaacacgatgatcatcgatcgcgccgacatgttcgggctgtcg
cagctctaccagctccgtggtcgggtcggtcgctcgagagagcgcgcctattgctacctg
gtcgtccccccgccgaacgccatgacggacgagtcgcgggccaggatcgaagcactggag
cgtcacacggagctgggctccggattccagatcgcctcgctcgacctggaactgcgtggg
gggggggacctgctcggcgcggagcagagcggcacggtggcgtcggtcgggttcgagctg
ttctgccagatgctcgatgaggcggtccacgaactccaggggcacccggtggtccacgag
gtggatccggagctcagcttcgacgccgacgcgctgctgcccgaggactacatctctgat
gttggggtgcgcctcacgctctacaagcgcttcgccggtgcctcgagcatcgacgaggtg
caggagctggccaccgagatggaggatcggttcgggccaccgccggtggaggggcgccgc
ttcgtccacctgatgcgcctcaagacggagctgcgcaagctgcgggcactggggtgcgag
gcgacatcgaagggcgtgacgctgcacctgcgcgaggacacgccgctcgatacgaccaag
atcatgcagctgatgcagcagaaaggctctccctacaaggtgacgcccgacatgaggctg
agccggcgcacgcgcgagagcgagatgttcgcgagcgggctggaggcggccgacaagctg
ttgagcgatctggcggggtgcttgaaggacggcgtctga
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