Chondromyces crocatus: CMC5_039680
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Entry
CMC5_039680 CDS
T04010
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ccro
Chondromyces crocatus
Pathway
ccro02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ccro00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CMC5_039680 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccro03021
]
CMC5_039680 (rpoD)
Transcription machinery [BR:
ccro03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CMC5_039680 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Sigma70_ner
VPS28
Motif
Other DBs
NCBI-ProteinID:
AKT39817
UniProt:
A0A0K1EGK7
LinkDB
All DBs
Position
complement(5301729..5303645)
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AA seq
638 aa
AA seq
DB search
MASKAKQSSGRAGGIAKGAGGTANGAKGGATREASSGGRSGSKPDGALRTERAEKDRKAL
EKLVETGKSKGFLTYDEVNDALPADVSPDQIDDVVGALGDEDIEIVDGATQVKIAPKRIA
DEEASDKKLLLTSDREEEDVDYYSKSNDPVRMYLRKMGSVSLLTREGEVEIAKRIETGEQ
KVNAAILDSPIAVREIIDLGEKLRKHKIRVKEIIKDAENDDQEFDEEEADRRIIRLIDKV
KRLDKRKAELIDERKEGVKTDTRRKQLDAEVAQVNGELVTTLEEMRLNKRTIDKIVQKLK
GLISKVEKAEAGATELEKRTGLSKGEIKRELAKVKGNRIAEARLARKLNVTREDLLEWEA
TIKNAQKGLKKVEEELNIDVEAIRRTYENIREGERMAEKAKAELVEANLRLVVSIAKKYT
NRGLQFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAITRAIADQARTIRIPVH
MIETINKLIRTSRYLVQEYGREPTPEEIAEKMELPLDKVRKVLKIAKEPISLETPIGEEE
DSHLGDFIEDKSIISPADAVINMNLAEQTRKVLKTLTPREEKVLRMRFGIGEKSDHTLEE
VGQDFEVTRERIRQIEAKALRKLRHPSRSKQLKSFIDS
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcaaggccaagcagtcttctggtcgggcgggcggcatcgcaaagggcgcgggc
gggaccgcaaacggtgcgaagggtggagcgacgcgcgaggcgtcctctggaggccgcagt
ggttccaagcccgatggcgcattgcgcacggagcgggcagagaaggaccggaaggccctg
gaaaagctcgtcgagaccggcaagagcaagggcttcctcacctacgacgaggtgaacgac
gcgctcccggcggacgtctcccccgaccagatcgacgatgtcgtcggtgcccttggcgac
gaggacatcgagatcgtcgacggggcgacgcaggtcaagattgctcccaagcgaatcgcc
gacgaggaagcgtccgacaagaagctcctcctcacgtcggatcgcgaagaagaggacgtc
gactactactccaagtcgaacgatcccgtccggatgtacctgcgcaagatggggagcgtc
tcgctcctcacgcgcgagggcgaggtcgagatcgcgaagcggatcgagacaggcgagcag
aaggtcaatgccgccatcctcgattctccgatcgccgtccgcgagatcatcgatctcggt
gagaagctccggaagcacaagatccgcgtcaaggagatcatcaaggacgcggagaacgac
gaccaggagttcgacgaggaggaggccgaccgccgcatcatccgcctgatcgacaaggtc
aagcggctcgacaagcgcaaggctgaactcatcgacgagcgcaaggagggtgtcaagacg
gacacccggcgcaagcagctcgatgcagaggtggctcaggtcaacggtgagctggtcacg
acgctcgaagagatgcgcttgaacaagcggacgatcgacaagatcgtccagaagctcaag
ggcctcatctccaaggtggagaaggcggaagcgggcgccaccgagctggagaagcgcacg
ggtctctcgaagggcgagatcaagcgtgagctggcgaaggtcaaggggaacaggatcgcg
gaagcgcgcctcgcccggaagctcaacgtcacacgcgaggacctcctcgagtgggaagcg
accatcaagaacgcccagaagggtctcaagaaggtcgaggaagagctgaacatcgacgtc
gaggccatccggcggacctacgagaacatccgcgagggcgagcggatggccgagaaggcg
aaggccgagctggtcgaggcgaacctccgcctcgtggtctcgatcgcgaagaagtacacg
aaccgcgggctccagttcctggatctgatccaggaggggaacatcggcctgatgaaggcc
gtggacaagttcgagtacaagcgcggctacaagttctcgacgtatgcgacctggtggatc
cggcaagcaatcacacgcgcgatcgcagaccaggcgcggacgatccgtatccccgtccac
atgatcgagacgatcaacaagctgatccgaacgtctcgctacctcgtgcaggaatacggg
cgtgagccgacgcctgaagagatcgcagagaagatggagcttccgctcgacaaggtgcgg
aaggtcctcaagatcgccaaggagcccatctccctcgagacaccgatcggtgaagaggaa
gactcacatctcggcgacttcatcgaagacaagagcatcatttcgccggcagacgccgtc
atcaacatgaacctcgccgagcagacgaggaaggtgctgaagacgctcacaccgcgcgag
gagaaggtgctccggatgcggttcggtatcggcgagaagagcgaccacacgctcgaagag
gtgggtcaagacttcgaggtcacgcgcgagcgtatccgacagatagaggcgaaggcgctg
cggaagctgcgtcacccgagccgctcgaagcagctcaagagcttcatcgacagctga
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