Chondromyces crocatus: CMC5_062210
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Entry
CMC5_062210 CDS
T04010
Symbol
ligT
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
ccro
Chondromyces crocatus
Brite
KEGG Orthology (KO) [BR:
ccro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ccro03016
]
CMC5_062210 (ligT)
Enzymes [BR:
ccro01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
CMC5_062210 (ligT)
Transfer RNA biogenesis [BR:
ccro03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
CMC5_062210 (ligT)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Motif
Other DBs
NCBI-ProteinID:
AKT41999
UniProt:
A0A0K1EMA8
LinkDB
All DBs
Position
complement(8469810..8470385)
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AA seq
191 aa
AA seq
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MRVFVAVEPGADQLRKINSFVEKLTPKAPSAKWVDPAGLHVSLAFLGDIAEERLPLVIAA
AESASALHRPLTLRLGKGGVFGAGRRPRVLWLEVTGDVDELGAVRRDLEQALAMSTGYVP
EMERFEPHLTLARSRDPRGDTALETCAQMLADEDFGEVRVAELVVYQSELTPKGARYTVM
ARAPLTALLQV
NT seq
576 nt
NT seq
+upstream
nt +downstream
nt
gtgcgggtattcgtcgctgtagagccaggtgccgaccagctccggaagatcaactcgttc
gtggagaagctgacgccgaaggcgccttcggcgaagtgggtcgatcctgcggggctgcac
gtgtcgctggccttcctcggtgacatcgccgaggagcgcctgccgctggtgatcgcggcc
gcggaaagcgcgtcggcgctgcatcgaccgctgaccttgcgcctcggtaaggggggcgtg
ttcggggcaggccgcaggccgcgggtgctctggctcgaggtgacgggtgatgtggacgag
ctgggggccgtgcggagggatctcgagcaggcactggcgatgtcgacgggctacgtgccg
gagatggagcgcttcgagccacacctgaccctggcacgatctcgggatccacggggagat
accgcgctggagacgtgtgcgcagatgctcgccgacgaggacttcggcgaggtgcgtgtc
gcggagctggtggtctaccagagcgagctgacgccgaagggcgcgcggtacacggtgatg
gcgcgggctccgttgacggcgctcttgcaggtgtag
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