Chondromyces crocatus: CMC5_082890
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Entry
CMC5_082890 CDS
T04010
Name
(GenBank) uncharacterized protein
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ccro
Chondromyces crocatus
Pathway
ccro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CMC5_082890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccro03019
]
CMC5_082890
03016 Transfer RNA biogenesis [BR:
ccro03016
]
CMC5_082890
Enzymes [BR:
ccro01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CMC5_082890
Messenger RNA biogenesis [BR:
ccro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CMC5_082890
Transfer RNA biogenesis [BR:
ccro03016
]
Prokaryotic type
tRNA degradation factors
CMC5_082890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
HTH_IclR
S1CSD-TOTE-2
Dimerisation
Motif
Other DBs
NCBI-ProteinID:
AKT44051
UniProt:
A0A0K1ET59
LinkDB
All DBs
Position
complement(11137624..11141889)
Genome browser
AA seq
1421 aa
AA seq
DB search
MKNSPPVRRDAVLDLLASFGRALHVNEIAERLGVEPRRYAGLQRLLDDLSYNNVVVALPG
QRFKAAAEQVERRGVEHEGFLNVNPRGFAFVTVGGMPEGIYVAPESLGGGMHGDQVAVRI
TSRSRRGVEGAVLRVLKRRHARVAGTLRRRGKSAWLEPDDQRMRGPIVLRSEEGHGRVDG
RDGSAVVCRITQFPESPNENPEGVLEALLGEPGDPEVEVQKILIREGIVEEHPADAIREA
EAFGGEVAPEALVGREDLTYLPLPTIDPEDARDHDDAVWVIREDDGSFRAWIAIADVSHY
VRPGTALDQEAVARGNSIYLPDRAIPMLPRALSSNLCSLLPGRIRLCLCVEVELSPTGDV
RSARVIEGYMRSIAKLTYPGVARTLGFTQEPPRSPAAEALRADLAVMWDLSRLLRAKRMR
RGALDFELPEAKVVFDADTKAPKDVQKRSQDPGVMKAYQLIEEMMLLANEVCAAYVVEKG
APSVFRYHGPPDLAKLERFSAMCGELGITFEPEDAEDPKRLSAFLKKLASHPQKQVLHML
LLRAMKQAVYDVANVGHFGLASTAYLHFTSPIRRYPDVTAHRAIRALVRGEKVDRSDEGK
ELLIAAAAQSSDRERKGMEVEREVMDLHRALVMRERVGETFTGTVTAIVGTGVFVNLDDP
FVDVMVRMEALGPDRYDMDEQGLRVIGARSGDRVSLGDTLQVKIEDVSILRRQVLGSRVR
FAGEEALEARTSRPGQGFERGGARDRGKAAFDRGGARHGKQAPAFDRGAARHGKQAPAFD
RGAARGGAQAGKFERGAARHGKQVPAFDRGAARHGKQAPAFDGSAARHGKQAPAFDRGGA
RFGAQGGKFERGSAQQRPHEQRVGRDAPPLWEETTSETQVQVHAATQGSAQAAAEASRLR
RRQVIDGDAKARKRGLERGAPGPSEPEPTWVAHVAQGAHGAHGVGAAPAVAAEPVTVDAR
STAGAPVGNGPAPRAEVRGGFEPSAPKPAVAAHALEAGAAGVEPAAVTSAAAAPRAERGQ
ESTQVSRRMAARTAGAKAPKGGETTSTAEPADAGRGKVLVAQTGAGRREEGKLASSKSAT
PGGAAQPPSHAGKTAQRADDTQVVPQGEPHGKADRDVAVQGKQAGKRNQVPAQSKRTGKA
EPATAQVEQVGRGKQAGRGKQAGQSKQAAPQGKASKPSKAGAKQTPQARSTTRAAAPSTR
AERRAGRAVAPLGTDALSGQANQAELVLAALVQAAQASLAAQAPQRGRRAVAPQAAASSA
APRSGGRGGRKAAPVKGASAASVVPSASKSAARSARATSGGGAPAAAKGAAAKGAAAKGA
AAKGAAAKGAAAKGAAAKGAAAKGAAAKGAATKGAAAKGVAASPGAQPSGKAQGQAARVT
SAAKRGGVATPAPAGRSAKPAASKPVPAPSGKPAGRGKKSS
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
atgaagaactctcctccggtccgacgggatgccgtcctggacctgctggcctccttcggc
cgggcattgcatgtgaacgagattgcggagcgcctcggggtcgagccccgaaggtatgcc
gggctccagcggctgctcgatgatctttcctacaacaacgtggtggtggcgctccccggg
caacgcttcaaggcggctgccgagcaggtcgagcgtcgtggtgtggagcacgagggcttt
ctgaatgtgaacccccgggggttcgcgttcgtgacggtcggggggatgcccgagggcatt
tacgtggcaccggagtcgctcggcggcgggatgcacggcgatcaggtcgcggtgcggatc
acctcgcggtcgcggcgcggggtcgagggcgcggtgctgcgggtgctgaagcgccggcac
gcgcgcgtggcggggaccttgcggcggcgcgggaagagcgcgtggctggagccggacgat
cagcggatgcgggggccgatcgtgctccggtccgaggaaggtcacggccgggtggacggg
cgcgatgggtcggccgtggtgtgtcggatcacccagttcccggagtcgccgaacgagaat
ccggaaggggtgctggaggcgctgctcggcgagccaggggacccggaggtcgaggtgcag
aagatcctcatccgcgaggggatcgtcgaggagcacccggcggacgcgatccgggaggcg
gaggcgttcgggggcgaggtggccccggaggcgctggtggggagggaggacctgacctac
ctgcccttgccgacgatcgatccggaggacgcgcgcgatcacgacgatgcggtgtgggtc
atccgggaagacgatgggtcgttccgggcgtggatcgcgattgcggacgtgtcgcattac
gtgcggccagggacggcgctcgatcaggaggcggtggcgcgagggaactcgatctacctg
ccggaccgggccatcccgatgctgccgcgggcgctgtcgtcgaacctgtgctcgctcctg
cccgggcgcatccggctctgtctctgcgtggaggtggagctgtcacccacgggggacgtg
cgcagcgcgcgggtgatcgaggggtacatgcgctcgatcgcgaagctgacctacccgggg
gtggcgcggacgctgggcttcacgcaggagccgccgcggagtccggcagccgaggcgctg
cgcgcggacctcgcggtgatgtgggacctgtcgcggcttctgcgggcgaagcggatgcgg
cgtggggcgctcgacttcgagctgccggaggcgaaggtggtcttcgacgccgacacgaag
gcgccgaaggacgtgcagaagcggtcgcaggaccctggggtgatgaaggcgtatcagctc
atcgaggagatgatgctgctcgcgaacgaggtgtgcgcggcgtacgtggtggagaagggg
gcgccgtcggtgttccgctaccacgggccgccggacctggcgaagctcgagcggttctcg
gcgatgtgcggggagctggggatcaccttcgagccggaggacgcggaggacccgaagcgg
ctcagcgcgttcctgaagaagctcgcgtcgcacccgcagaagcaggtgctgcacatgctg
ctgctgcgggcgatgaagcaggcggtgtacgacgtggcgaacgtgggtcacttcggcctg
gcgtcgacggcgtacctgcacttcacgtcgccgatccggcgctacccggacgtgacggcg
caccgggcgatccgggcgctggtccgtggcgaaaaggtggaccggagcgacgaggggaag
gagctgctcatcgcggcggcggcgcagtcgtccgaccgggagcggaaggggatggaggtg
gagcgcgaggtgatggacctgcaccgcgcgctggtgatgcgcgagcgggtgggggagacg
ttcacggggacggtgaccgcgatcgtggggaccggggtgttcgtgaatctggacgatccg
ttcgtggacgtgatggtgcgcatggaggcgctggggcccgatcgctacgacatggacgag
caagggctgcgggtgatcggggcgcgctcgggggatcgggtgagcctcggggacaccctg
caggtgaagatcgaggacgtctcgatcctgcggcggcaggtgctggggagccgggtgcgg
ttcgcgggggaggaggcgctggaggcgcggacgagccggcctggccaagggttcgagcgc
ggtggggcgcgggaccgggggaaggcggcgttcgatcgcggtggcgcgcggcatgggaag
caggcgccggcgttcgatcggggcgcggcgcggcacggcaagcaagcgccggcgttcgat
cggggtgctgcgcgaggcggtgcgcaggccgggaagttcgagcggggcgcagcgcggcac
ggcaagcaggtgccggcgttcgatcgaggcgcggcgcggcacggcaagcaggcgccggcg
ttcgatgggagcgcggcgcggcatggcaagcaggcgccggcgttcgaccgcggtggcgcg
cggttcggagcgcaaggcgggaagttcgagcggggtagcgcgcagcagcgtcctcacgag
caacgggtcgggcgtgatgcgccgccgctctgggaggagacgacgtcggagacgcaggtg
caggtgcacgcggcgacgcagggctcggcgcaggcggctgccgaggcgtcacgtctgagg
cggcggcaggtcatcgacggcgacgcgaaggcgcgaaagcgcgggctggagcgaggggct
cctggtccttcggagcccgagccgacgtgggtggcgcacgtggcgcagggggcgcacggg
gcgcacggtgtcggtgcggcgccggcggtggccgcggagccggtgacggtggacgcccga
tcgaccgcgggagctcccgtggggaatggtccggcgccgcgtgccgaggtgaggggcggc
ttcgagccgtccgctccgaagccggccgtcgcggcgcacgcgctggaggcgggggctgcg
ggggtggagccggcggcggtgacgtctgcggcggcagcgccgcgcgcggagcgggggcag
gagtcgacccaggtgtccaggaggatggccgcaaggacggctggggcgaaggccccgaag
ggaggagagaccacgagcaccgcggagccggcagacgccggacgtggcaaggtgctggtg
gcgcagacgggtgcagggcggcgcgaagaagggaagctggcgtcgagcaagagcgcgacg
ccggggggagcggcgcagccgccttcgcatgcaggcaagacagcgcagcgcgctgacgac
acgcaggtggttccgcagggcgagccacacggaaaggctgatcgagacgtggcagtgcag
ggtaagcaagccgggaagcgcaatcaggtcccggcgcagagcaagcgaaccgggaaggcc
gagccggcgacggcgcaggtcgagcaggtcggtcggggcaagcaggccggtcggggcaag
caggccggccagagcaagcaagccgccccccagggcaaggcatcgaagccgtcgaaggcg
ggggcgaagcagacgccgcaagccaggtccacgacgcgcgctgcggcgccctcgacgagg
gccgagcggcgtgctggacgcgctgttgctcccctcgggacagacgcgctctcggggcaa
gcaaaccaggcggaactggtcctggcggcgctggtgcaggccgcgcaggcctctctggcc
gcgcaagcgccgcagcgtgggcgtcgggcggtggctcctcaggcggccgcgtcgtctgct
gcgcctcgcagcggtggtcgaggggggcgcaaggccgcgcccgtcaagggagccagtgct
gcctccgtggtgccgtcggcgagcaagtcggccgcgcgctccgcacgggcgacgagcggc
ggcggggcgcctgccgcggcgaagggcgcagcggccaagggcgcagcggccaagggtgca
gcagccaagggtgcagcagccaagggcgcagcggcgaagggcgcagcggcgaagggtgca
gcggccaagggcgcagcagccaagggcgcagcaaccaagggtgcagcagccaagggcgta
gcggcgtcccccggtgcacagcccagcgggaaggcgcaagggcaggcggctcgggtgacc
tccgcggcgaagcgtgggggagtggccactccggcgcccgctgggcgctcggcgaagcct
gcggcctcgaagccggtccctgccccgagcggcaagcctgccggtcgcggcaagaagtcg
tcgtaa
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