Crocuta crocuta (spotted hyena): 144228951
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Entry
144228951 CDS
T11532
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ccru Crocuta crocuta (spotted hyena)
Pathway
ccru03013
Nucleocytoplasmic transport
ccru03015
mRNA surveillance pathway
ccru03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccru00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
144228951 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
144228951 (DDX39B)
03015 mRNA surveillance pathway
144228951 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccru03019
]
144228951 (DDX39B)
03041 Spliceosome [BR:
ccru03041
]
144228951 (DDX39B)
Enzymes [BR:
ccru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
144228951 (DDX39B)
Messenger RNA biogenesis [BR:
ccru03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
144228951 (DDX39B)
Spliceosome [BR:
ccru03041
]
Complex C
Other components
EJC/TREX
144228951 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
144228951 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
144228951
NCBI-ProteinID:
XP_077616997
LinkDB
All DBs
Position
Unknown
AA seq
548 aa
AA seq
DB search
MAENDVDNELLDYEEDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDVNTLLPSLPPLPAHCLLPFRALFLQTPLSFKCQEGGTCPSGSDDSLKRHIEAETA
SVRVCAGARETPEDLVGLTWVGAFGTSVPDPLLLTIHTSSHPSGSSVDVSRQRRSTVERR
GKCGRSSSSTXDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaacgatgtggacaatgagctcttggactatgaagaagatgaggtggagaca
gcagcaggaggagacggggctgaggcccctgccaagaaggatgtcaagggctcctatgtc
tccatccacagctctggctttcgtgacttcctactgaagccagagttgctccgggccatt
gttgactgtggctttgagcatccatcggaagtccagcatgagtgcattcctcaggccatt
ttgggaatggatgttctatgccaggccaagtcaggcatgggaaagacagcagtgtttgtg
ctggccacactgcaacagctggagccggttactggacaggtgtctgtgctggtgatgtgt
cacactcgggagttggcttttcagatcagcaaggaatatgagcgcttctctaaatacatg
cccaatgtcaaggtcgcggtgttttttggtggtctgtctatcaagaaggatgaagaggtg
ctgaagaaaaactgcccgcatatcgtcgtggggacccctggccgcatcctagccctggct
cgaaataagagccttaatctcaaacacattaaacattttatcttggatgaatgtgataag
atgcttgaacagctcgacatgcgtcgggatgtccaggaaatttttcgcatgaccccacat
gagaagcaggtcatgatgttcagtgctaccttgagcaaagagatccgtccagtctgccgc
aagttcatgcaagacgtaaatacccttctaccttctctccctccactccccgcccactgc
ctcctccccttccgcgccctcttcctccagactcctttgtccttcaagtgccaagaaggg
ggcacgtgcccatctgggagtgatgactccttgaagagacacatagaggcagagacagct
agtgttagggtctgcgcgggcgccagggaaactccggaagacttggtcgggttaacttgg
gtgggggcctttggcacctcagtccccgatcccttactccttaccatccatacctcctcg
cacccatctggaagctcggttgatgtgagccggcagcggagaagcaccgtggagcggcgg
gggaaatgcggacgatcaagttcctccacccnggatgatgagacgaagctgacgctgcat
gggttgcagcagtactacgtgaaactgaaggacaacgagaagaaccggaagctctttgac
cttctcgatgtccttgagttcaatcaggtggtgatctttgtgaaatctgtgcagcgttgc
attgccctggcccagcttttagtggagcagaacttcccagccattgccatccaccgaggg
atgccccaggaggagaggctttctcggtatcagcagtttaaagattttcaacgacgaatt
cttgtggccaccaacctttttggccgaggcatggacattgagcgggtgaacattgccttc
aactatgacatgcctgaggattctgacacctacctgcatcgggtggctcgagcaggccgg
tttggcaccaagggcttggccatcacgtttgtgtcagatgaaaatgacgccaagatcctc
aatgacgtgcaggatcgttttgaagtcaatattagtgagctgcctgatgagatagacatt
tcctcctacattgaacagacgcggtag
DBGET
integrated database retrieval system
