Crocuta crocuta (spotted hyena): 144245019
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Entry
144245019 CDS
T11532
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
ccru
Crocuta crocuta (spotted hyena)
Pathway
ccru03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccru00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
144245019 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccru03041
]
144245019 (DDX42)
Enzymes [BR:
ccru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
144245019 (DDX42)
Spliceosome [BR:
ccru03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
144245019 (DDX42)
Complex B
144245019 (DDX42)
Complex C
U2 SnRNP specific factors
144245019 (DDX42)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
144245019
NCBI-ProteinID:
XP_077636553
LinkDB
All DBs
Position
Unknown
AA seq
934 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAISAGKKEEPKLPQQSHSAFGATSSSSGFGKSAPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVDLPYIPAENSPTRQQFHSKPPDSDSDDDPLEAFM
AEVEDQAARDMKRLEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKV
ISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENTDRGNNNNVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLSNQ
KAGSSAAGASGWTSAGSLNSVPTNSAQQGHNSPDSPIASATKGIPGFGNTGSLSGAPVTY
PSAGTQGVNNTASGSNSREGPPGGNGKRERYTENRGGSRHSHGESGNRHGDSPRHGEGGR
HGDGYRYPESGSRHADGHRHGENRHGGGGGRHGEGRGANDGRNGESRKEGCNRESKVDPK
VDIKVDKMDSKTDKTADGFAVPEPPKRKKSRWDS
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgaattggaataaaggtggcccgggcaccaagaggggatttggctttggaggttttgcc
atcagtgctggaaagaaggaagaacccaaactcccacaacagtcccacagtgcctttggg
gcaaccagctcttcttctggatttggaaagtcagctccaccacagctcccttctttctac
aaaattggatctaaacgggccaactttgatgaagaaaatgcatattttgaagatgaggaa
gaagactctagcaatgttgatttgccttatattcctgctgaaaactcacctacccgccag
cagttccattccaaacccccagattctgacagtgatgatgatcccttggaggcattcatg
gctgaagtggaggatcaggcagctagagacatgaagaggcttgaagaaaaagacaaggaa
agaaaaaacgtaaagggtattcgagatgacattgaagaggaagatgaccaagaagcttat
tttcggtacatggcagagaatccaactgctggtgtggttcaggaggaagaagaagataat
ctggaatatgatagtgatggaaatccaattgcaccttccaaaaaaatcattgatcctctt
cctcccattgatcattcagagattgactatccaccatttgaaaaaaatttttacaacgag
catgaagagataaccaaccttacccctcagcagctaatagatctccgtcataagctcaat
cttcgggtctctggtgctgcacctcctagaccaggaagtagttttgctcattttgggttt
gatgaacaacttatgcaccagattcgtaaatctgagtacacacaaccgactccaatacag
tgccagggtgtgcctgtggcattaagtggtagagacatgattggtattgccaaaacaggc
agcggaaaaactgcggcctttatctggcccatgttgattcatataatggaccagaaggaa
ctggaaccaggtgatggaccaattgcagtgattgtgtgtcctactagggagctttgccag
cagatccatgcagaatgtaagcggtttgggaaagcgtataatcttcgatcagtggccgtg
tatggaggagggagcatgtgggagcaggccaaggcccttcaggaaggggcagagattgtt
gtgtgtaccccaggtcgactgattgatcatgtgaagaagaaagctaccaatcttcaaagg
gtctcttaccttgtgtttgatgaagcagatcgcatgtttgacatgggatttgagtaccag
gtgcgatccatagcaagtcatgtccgtccggacagacagactctcttattcagtgcaact
tttcggaaaaagattgaaaaactggccagagacatcctaatcgaccctattcgtgtggtg
cagggagacattggagaggcaaatgaagatgtgacacagattgtggagattctccactct
gggcctagtaaatggaactggcttacccggcgcctggtggaatttacctcttcaggaagt
gtcctcctgtttgttactaaaaaagccaatgctgaagagctagccaataaccttaagcag
gagggtcataatcttgggctgcttcatggggacatggatcagagtgaaagaaacaaagtc
atttcagactttaagaaaaaggacatccccgtcctggtggccacagatgttgcagcccgt
ggtctggacattccttcaattaagactgtcattaactatgacgtggcacgagacattgat
actcacactcacaggattggccgcacaggtcgagcgggtgagaaaggcgtggcctatacc
ttgctgacccccaaggacagcaattttgctggtgaccttgtccggaacttggaaggagcc
aatcaacatgtttccaaggaactcctggatctagcaatgcagaatgcctggtttcggaaa
tcccgctttaaaggaggcaaaggcaaaaagctgaacattggtggaggtggcctaggctac
agggagcggcctggcctaggctcagagaacacggaccgaggaaacaacaacaacgtgatg
agcaattatgaggcctacaagccctccacaggagccatgggagatcggctgacagccatg
aaagcagctttccagtcacagtacaagagtcactttgttgctgccagcttaagcaaccag
aaggcgggaagctctgctgctggcgcaagtggatggactagtgcagggagcttgaattct
gttccaactaattcagcccagcagggccataacagtccagacagccccattgccagcgcc
accaagggcatcccaggctttggcaacaccgggagcctcagcggcgctccagtgacctac
ccttctgctggaacccagggagtcaacaacacagcttcagggagtaacagccgagaaggg
cctcctggaggcaacgggaagagagagcgatatactgaaaaccgtggcggcagccgccac
agtcacggagagagtggcaatcggcatggtgatagcccacgtcacggagaaggtggtcgc
catggagacggataccgctacccagagagtggcagccgtcatgctgatggtcaccgccac
ggagagaacaggcacggaggaggtggaggccgacatggagagggccgaggtgcaaacgat
ggtcggaatggtgaaagcaggaaggaaggttgtaatcgtgagagcaaggtggaccccaaa
gtggacatcaaggtggacaagatggacagcaagacagacaagacagctgacggtttcgct
gtccctgagccacccaagcgcaagaaaagtcgatgggacagttag
DBGET
integrated database retrieval system
