Caulobacter vibrioides NA1000: CCNA_00878
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Entry
CCNA_00878 CDS
T00841
Name
(RefSeq) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ccs
Caulobacter vibrioides NA1000
Pathway
ccs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CCNA_00878
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccs03019
]
CCNA_00878
Enzymes [BR:
ccs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CCNA_00878
Messenger RNA biogenesis [BR:
ccs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CCNA_00878
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Utp25_C
Helicase_RecD
HEM4
AAA_22
Motif
Other DBs
NCBI-GeneID:
7329918
NCBI-ProteinID:
YP_002516251
UniProt:
A0A0H3C5T6
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All DBs
Position
955220..956650
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AA seq
476 aa
AA seq
DB search
MTQFSDLGLAKPLLKALAEKGYKEPTPIQAQAIPVVLQGKDLLGIAQTGTGKTAAFALPI
LQRLAEDRKPAPRRGCRCLVLSPTRELATQIAENFKAYAVHMGLSVHTIYGGVKYGPQMK
ALAGGIDVLVATPGRLMDHMAEKSAIVSGTEIFVLDEADQMLDLGFVVPIRKIAAQLTKN
RQNLFFSATMPSEIGKLAGELLNNPVQVSVAPQATTVERIDQRVLFIEAQRKRPLLAELF
ADTSFSRTIVFTRTKRGADRVAKYLNAAGIEAASIHGDKTQGQRERALAAFKAGEMRALV
ATDIAARGIDVNDVSHVINYELPNVPEAYVHRIGRTARKGKDGIAISFCADDERNLLKDI
QKATRQTIPSFDRRNDKQLAAAAAVADKLVPAEKYVDPRKADPRNNVPSELRRKRNRNGG
GGGGGRAEGAQKAQGRGPGQGKAGAKPGQKAGPGQNEFRGPKRQSATAEKRWSPID
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
gtgactcaattttccgaccttggcctggccaagccgctgctgaaggcgcttgctgaaaag
ggctacaaggaaccgaccccgatccaggcccaggccattccggtggtgctgcaaggcaag
gacctgttgggcatcgcccagacgggcaccggcaagaccgccgccttcgccctgccgatc
ctgcaacgtctggccgaagaccgtaagcccgcgccgcgccgcggctgccgctgcctggtc
ctgtccccgacccgcgaactggcgacgcaaatcgccgagaacttcaaggcctacgccgtc
cacatgggcctgtcggtccacaccatctatggcggcgtgaagtacggcccgcagatgaag
gccctggccggcggcatcgacgttctggtcgccacgcccggccgcctgatggaccacatg
gccgagaagtcggccattgtctcgggcaccgagatcttcgtgctcgacgaagccgaccag
atgctggacctgggcttcgtggtgccgatccgcaagatcgccgcccagctgaccaagaac
cgccagaacctgttcttctcggccaccatgccgagcgaaatcggcaagctggccggtgag
ctgctgaacaacccggtgcaggtctcggtcgcgccgcaggccaccacggtcgagcgcatc
gaccagcgcgtgctgttcatcgaggcccagcgcaagcgtccgctgctggccgagctgttc
gccgacacgagcttctcgcgcaccatcgtcttcacccgcaccaagcgcggcgcggaccgg
gtggccaagtatctgaacgcggccggtatcgaagccgcctcgatccacggcgacaagacg
cagggtcagcgcgaacgcgcgctcgcggccttcaaggccggcgagatgcgggccctggtg
gccaccgacatcgccgcgcgcggcatcgacgtcaacgacgtcagccacgtgatcaactac
gagctgcccaacgtgccggaggcctatgtccaccggatcggccgcaccgcccgcaagggc
aaggacggcatcgccatcagcttctgcgccgatgacgagcgtaacctgctgaaggacatc
cagaaggccacccgccagacgatcccgtccttcgaccgtcgcaacgacaagcagctggcc
gccgccgccgccgtcgccgacaagctggtcccggccgagaagtatgtcgacccgcgcaag
gccgacccgcgcaacaacgtcccgtcggaactgcgccgcaagcgtaaccgcaacggcggc
ggcggcggcggcggtcgcgccgaaggcgctcagaaggcgcaaggtcgcggccccggacag
ggcaaggccggcgccaagccgggccagaaggccggtcccggccagaacgagttccgcggt
cccaagcgccagtcggccacggccgagaagcgctggtcgcctatcgactaa
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