Caulobacter vibrioides NA1000: CCNA_03578
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Entry
CCNA_03578 CDS
T00841
Name
(RefSeq) ATP-dependent DNA helicase recQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ccs
Caulobacter vibrioides NA1000
Pathway
ccs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CCNA_03578
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccs03019
]
CCNA_03578
03400 DNA repair and recombination proteins [BR:
ccs03400
]
CCNA_03578
Enzymes [BR:
ccs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CCNA_03578
Messenger RNA biogenesis [BR:
ccs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CCNA_03578
DNA repair and recombination proteins [BR:
ccs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CCNA_03578
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
HRDC
RQC
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-GeneID:
7332576
NCBI-ProteinID:
YP_002518951
UniProt:
A0A0H3CDG4
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All DBs
Position
3735005..3736852
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AA seq
615 aa
AA seq
DB search
MYVPPESPELDRARDVLRRTFGHADFRGLQAGVIHELLTGHSAMAVLPTGGGKSLCYQIP
SLIRPGLGLVISPLIALMADQVQGLRQAGVAAERLDSNISMDERSDIWRRIDAGEVDLLY
LSPEGLMQPWMLDRLSRTPLALIAVDEAHCVSQWGHDFRPEYRMLGRLAELFPDAPRLAV
TATADARTRDDIRAELRLQGAAEFVDSFARPELALSAERKRGKGHDRVVELVLERPGRSG
VIYAGSRDGTEKLAERLNAEGVPALAYHAGLDKAVRARRLEDFLEADAAVMVATIAFGMG
VDKPDVRYVIHADPPAAIEAYWQEVGRAGRDGQPAEGITLYGSADMAWAARRIETREAPD
EVKQVQSRKLRQFYAMLEGVTCRAAAVRRYFGEEGVGHCGVCDICVSPPTGIDATQAAQK
ALSAVHRLGGRLGRGRVIEHLMGKTKDVTPQEAQLPTFGIGREFSQPTWRDLFDTLIFEG
LLREDPNDGRPLIGLGDVEGVRQVYRNERKVALRQTTDAPDSGGRAGGGMRKRREGRALT
IPAENQLLFEALRSWRKEQAQLQHVPPYVIFHDATLAEIAAARPATLAALGKAGGVGQGK
LDRYGEAVLKVVREN
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
gtgtacgtccctcccgaatccccagagctcgaccgcgcgcgcgacgtcctgcgccgcaca
tttggtcacgccgacttccggggtctgcaggccggggtcatccacgagctgctgaccggc
cacagcgccatggcggtgctgcccaccggtggcggcaagagcctgtgctaccagatcccg
tcgctgatccggccgggcctgggtctggtcatctcaccgctgatcgccctgatggccgac
caggtgcagggcctgcgccaggccggcgtcgccgccgagcggctggacagcaacatctcg
atggacgagcgctcggacatctggcggcgcatcgacgccggcgaggtggatctgctgtat
ctgtcgcccgagggcctgatgcagccctggatgctggaccggctctcgcgcacgccgctg
gccctgatcgccgtggacgaagcccactgtgtcagccagtggggccacgacttccgtcct
gaataccggatgctgggtcggctggccgagctgttccccgacgcgccgcgcctggccgtc
accgccaccgccgacgcccgcacccgtgacgacatccgcgccgagctgcgcctgcagggc
gcggccgagttcgtcgacagcttcgcgcgtccggagctggcgctcagcgcggagcgcaag
cgcggcaagggtcacgaccgggtggtggagctggttctggaacgccccggccgctctggc
gtcatctatgccggctcgcgcgacggcaccgagaagctggccgaacggctgaacgccgag
ggcgtcccggccctggcctatcacgccggtctcgacaaggccgttcgcgcccgccggctg
gaagacttcctcgaggccgacgccgcggtgatggtcgccacgatcgcgttcggcatgggc
gtcgacaagcccgacgtgcgctatgtgatccacgccgatccgccggccgccatcgaggcc
tattggcaggaagtcggccgcgccgggcgcgacggacagccggccgagggcatcaccctc
tatggctcggccgacatggcctgggctgcgcgccggatcgagacccgcgaggcgcccgat
gaggtcaagcaggtgcagtcgcgcaagctgcgccagttctacgccatgctggagggcgtc
acctgccgcgccgccgccgtccgccgctatttcggcgaagagggcgtcggccactgcggg
gtctgcgacatctgcgtctcgccgcccaccgggatcgacgccacgcaagcggctcagaag
gcgctgtcggccgtccaccggctgggcgggcgtcttggtcgcggccgcgtgatcgagcac
ctgatgggcaagaccaaggacgtcacgccccaggaggcgcaactgccgaccttcggcatc
ggccgcgagttcagccagccgacctggcgcgatctcttcgacaccctgatcttcgagggc
ctgctgcgcgaggatcccaatgacgggcgaccgctgatcggcctgggcgatgtcgagggc
gtgcggcaggtctatcgcaacgagcgcaaggtcgcgctgcgccagaccaccgacgcgccc
gacagcggcggccgcgcggggggcggaatgcgcaagcgccgcgagggccgcgccctgacc
atcccggccgaaaaccagctcctgttcgaggccctgcgctcctggcgcaaggagcaggcc
cagctgcagcacgtgccgccctatgtgatcttccacgacgccaccctggccgagatcgcg
gccgcgcgccccgccaccctggcggcgctgggcaaggccggcggcgtgggccaaggcaag
ctcgatcgctatggcgaggcggtcttgaaagtggttcgcgagaactaa
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